Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0317 |
Symbol | |
ID | 6146558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 323181 |
End bp | 325706 |
Gene Length | 2526 bp |
Protein Length | 841 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641615213 |
Product | hypothetical protein |
Protein accession | YP_001742421 |
Protein GI | 170682860 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0205782 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.00830158 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTTTAC GACGGTTCTC CCCAGGACTG AAAGCCCAGT TTGCCTTCGG CATGGTCTTT TTGTTCGTTC AGCCCGATGC CAGCGCTGCT GACATAAGTG CGCAGCAAAT AGGTGGGGTG ATTATTCCGC AGGCCTTCAG TCAGGCGCTC CAGGACGGCA TGAGCGTCCC GCTTTATATT CATCTCGCCG GTAGCCAGGG TCGCCAGGAC GATCAGCGAA TCGGCAGCGC TTTTATCTGG TTGGATGATG GACAGCTACG CATCCGGAAA ATACAGCTGG AAGAGAGTGA AGATAACGCC AGTGTCAGCG AACAAACTCG ACAGCAGCTG ATGACTCTGG CCAACGCCCC GTTCAATGAG GCCCTTACCA TCCCCCTGAC TGACAACGCG CAGTTGGATC TCAGCTTGCG CCAACTGCTG CTGCAGCTGG TGGTCAAGCG CGAAGCGCTG GGCACCGTAC TACGCTCACG TAGCGAAGAC ATCGGGCAGT CCAGTGTTAA CACCCTCAGC AGTAATCTGA GCTATAACTT CGGCGTCTAT AACAACCAGT TGCGTAACGG CGGGAGCAAC ACATCCAGCT ATCTGTCGCT GAATAACGTT ACTGCACTGC GCGAACATCA TGTGGTGCTC GACGGCTCGC TGTACGGGAT CGGTAGCGGT CAACAGGACA GTGAATTATA TAAAGCGATG TATGAACGCG ATTTTGCCGG TCACCGATTT GCCGGTGGAA TGCTCGACAC CTGGAACTTG CAGTCCTTAG GGCCGATGAC CGCCATTTCA GCAGGGAAGA TTTACGGCCT TTCCTGGGGA AACCAGGCCA GCTCCACCAT CTTCGACAGC AGCCAGTCAG CCACGCCAGT GATCGCCTTT TTACCGGCGG CGGGCGAAGT ACATCTCACC CGTGATGGGC GGTTACTAAG CGTTCAGAAC TTCACCATGG GCAATCATGA AGTGGATACC CGGGGTCTAC CGTACGGTAT TTACGATGTG GAAGTTGAGG TCATCGTTAA CGGTCGCGTG ATTAGCAAAC GCACTCAACG GGTCAATAAG CTGTTTAGCC GGGGGCGCGG CGTCGGTGCA CCACTGGCGT GGCAGATATG GGGCGGTAGC TTTCATATGG ATCGCTGGTC GGAAAACGGG AAAAAGACGC GACCAGCTAA AGAGAGTTGG CTGGCAGGTG CCTCGACCTC CGGCTCACTG AGTACGCTTA GCTGGGCGGC AACGGGATAT GGATACGATA ATCAGGCGGT GGGTGAAACC CGTCTGACGC TGCCGCTTGG GGGGGCGATC AACGTTAACC TGCAAAACAT GCTGGCCAGT GACAGCTCAT GGAGCAACAT CGCCAGCATC AGCGCCACTC TACCTGGAGG CTTCAGTTCG CTGTGGGTTA ACCAGGAAAA AACCCGCATT GGCAATCAAT TGCGACGTAG CGATGCCGAC AACCGTGCAA TCGGCGGCAC ACTCAACCTG AACTCACTGT GGTCGAAGCT GGGTACGTTC AGCATCAGCT ACAATGATGA CCGCCGCTAC AACAGCCATT ATTACACGGC AGATTACTAT CAAAATGTCT ACAGCGGTAC CTTTGGTTCG CTTGGCCTGC GGGCCGGTAT TCAGCGCTAT AACAACGGCG ACAGCAGCGC CAATACAGGG AAATATATCG CTCTCGATCT CTCGCTACCA CTGGGCAACT GGTTTAGCGC AGGGATGACC CATCAAAACG GCTACACCAT GGCAAACCTG TCAGCACGCA AACAGTTTGA TGAAGGAACC ATTCGCACTG TTGGTGCCAA TCTGTCACGA GCCATCTCCG GCGATACCGG TGATGACAAA ACTCTCAGTG GTGGGGCGTA TGCACAGTTC GACGCTCGTT ACGCCAGCGG AACGCTGAAC GTCAATAGCG CGGCGGACGG CTACATCAAT ACTAATTTGA CCGCCAACGG CAGCGTCGGC TGGCAGGGTA AAAACATTGC TGCCAGCGGG CGGACTGATG GCAACGCTGG GGTGATATTC AACACCGGGC TGGAGGACGA CGGTCAGATC AGCGCCAAAA TCAACGGACG GATTTTCCCG CTTAACGGCA AGCGTAACTA TCTCCCGCTC TCTCCCTATG GAAGATATGA GGTGGAGTTA CAGAACAGCA AAAACTCACT CGACAGTTAC GATATCGTCA GCGGTCGCAA AAGTCATCTG ACTCTCTATC CAGGCAATGT CGCTGTCATT GAGCCAGAGG TGAAGCAGAT GGTTACCGTC TCCGGTCGTA TCCGTGCGGA AGACGGCACA CTGCTGGCTA ACGCACGGAT TAACAACCAT ATCGGCCGAA CCCGAACCGA TGAAAACGGC GAGTTTGTCA TGGACGTGGA TAAGAAATAC CCCACTATCG ATTTTCGCTA CAGTGGCAAT AAAACCTGCG AAGTGGCACT GGAACTCAAT CAGGCGCGCG GTGCAGTCTG GGTCGGTGAT GTGGTCTGCA GCGGCCTCTC ATCGTGGGCG GCGGTGACGC AGACAGGAGA AGAGAATGAG AGTTAA
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Protein sequence | MPLRRFSPGL KAQFAFGMVF LFVQPDASAA DISAQQIGGV IIPQAFSQAL QDGMSVPLYI HLAGSQGRQD DQRIGSAFIW LDDGQLRIRK IQLEESEDNA SVSEQTRQQL MTLANAPFNE ALTIPLTDNA QLDLSLRQLL LQLVVKREAL GTVLRSRSED IGQSSVNTLS SNLSYNFGVY NNQLRNGGSN TSSYLSLNNV TALREHHVVL DGSLYGIGSG QQDSELYKAM YERDFAGHRF AGGMLDTWNL QSLGPMTAIS AGKIYGLSWG NQASSTIFDS SQSATPVIAF LPAAGEVHLT RDGRLLSVQN FTMGNHEVDT RGLPYGIYDV EVEVIVNGRV ISKRTQRVNK LFSRGRGVGA PLAWQIWGGS FHMDRWSENG KKTRPAKESW LAGASTSGSL STLSWAATGY GYDNQAVGET RLTLPLGGAI NVNLQNMLAS DSSWSNIASI SATLPGGFSS LWVNQEKTRI GNQLRRSDAD NRAIGGTLNL NSLWSKLGTF SISYNDDRRY NSHYYTADYY QNVYSGTFGS LGLRAGIQRY NNGDSSANTG KYIALDLSLP LGNWFSAGMT HQNGYTMANL SARKQFDEGT IRTVGANLSR AISGDTGDDK TLSGGAYAQF DARYASGTLN VNSAADGYIN TNLTANGSVG WQGKNIAASG RTDGNAGVIF NTGLEDDGQI SAKINGRIFP LNGKRNYLPL SPYGRYEVEL QNSKNSLDSY DIVSGRKSHL TLYPGNVAVI EPEVKQMVTV SGRIRAEDGT LLANARINNH IGRTRTDENG EFVMDVDKKY PTIDFRYSGN KTCEVALELN QARGAVWVGD VVCSGLSSWA AVTQTGEENE S
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