| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0197 |
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| Symbol | ldcC1 |
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| ID | 6147071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 218861 |
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| End bp | 221002 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641615098 |
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| Product | lysine decarboxylase, constitutive |
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| Protein accession | YP_001742314 |
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| Protein GI | 170683659 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCA TTGCCATTAT GGGACCGCAT GGCGTCTTTT ATAAAGATGA GCCCATCAAA
GAACTGGAGT CGGCGCTGGT GGCGCAAGGC TTTCAGATTA TCTGGCCACA AAACAGCGTT
GATTTGCTGA AATTTATCGA ACATAACCCT CGAATTTGCG GCGTGATTTT TGACTGGGAT
GAGTACAGTC TCGATTTATG TAGCGATATC AATCAGCTTA ATGAATATCT CCCGCTTTAT
GCCTTCATCA ACACCCACTC GACGATGGAT GTCAGCGTGC AGGATATGCG GATGGCGCTC
TGGTTTTTTG AATATGCGCT GGGGCAGGCG GAAGATATCG CCATTCGTAT GCGTCAGTAC
ACCAACGAAT ATCTTGATAA CATTACGCCG CCGTTCACGA AAGCCTTGTT TACCTACGTC
AAAGAGCGGA AGTACACCTT TTGTACGCCG GGGCATATGG GCGGCACCGC ATATCAAAAA
AGCCCGGTTG GCTGTCTGTT TTATGATTTT TTCGGCGGGA ATACCCTCAA GGCGGACGTC
TCTATTTCGG TCACCGAGCT TGGTTCGTTG CTCGACCACA CCGGGCCACA CCTGGAAGCG
GAAGAGTACA TCGCGCGGAC GTTTGGCGCG GAACAGAGTT ATATCGTCAC CAACGGAACA
TCGACGTCGA ACAAAATTGT GGGTATGTAC GCCGCGCCAT CCGGCAGTAC GCTGTTAATT
GACCGCAATT GTCATAAATC GCTGGCGCAT CTGTTGATGA TGAACGATGT AGTGCCGGTC
TGGCTAAAAC CAACACGTAA TGCGTTGGGG ATTCTTGGTG GGATCCCGCG CCGTGAATTT
TCTCGCGACA GTATCGAAGA GAAAGTCGCT GCTACCACGC AAGCACAATG GCCGGTTCAT
GCGGTGATTA CCAACTCCAC CTATGATGGC TTGCTCTACA ACACCGACTG GATCAAACAG
ACGCTGGATG TCCCGTCGAT TCACTTCGAT TCTGCCTGGG TGCCGTACAC CCATTTTCAT
CCGATCTACC AGGGTAAAAG TGGTATGAGC GGCGAGCGTG TTGCGGGAAA AGTGATCTTC
GAAACGCAAT CGACCCACAA AATGCTGGCG GCGTTATCGC AGGCTTCGCT GATCCACATT
AAAGGCGAGT ATGACGAAGA GGCGTTTAAC GAAGCCTTTA TGATGCATAC CACCACCTCG
CCCAGTTATC CCATTGTTGC TTCGGTTGAG ACGGCGGCGG CGATGCTGCG TGGTAATCCG
GGCAAACGGC TGATTAACCG TTCGGTGGAG CGGGCGCTGC ATTTTCGCAA AGAGGTCCAG
CGGCTGCGGG AAGAGTCTGA CGGTTGGTTT TTCGATATCT GGCAACCGCC GCAGGTGGAT
GAAGCCGAAT GCTGGCCCGT TGCGCCTGGC GAACAGTGGC ACGGCTTTAA CGATGCGGAT
GCCGATCATA TGTTTCTCGA TCCGGTTAAA GTCACTATTT TGACACCGGG GATGGACGAG
CAGGGCAATA TGAGCGAGGA GGGGATCCCG GCGGCGCTGG TGGCAAAATT CCTCGACGAA
CGTGGGATCG TAGTAGAGAA AACCGGCCCT TATAACCTGC TGTTTCTCTT TAGTATTGGC
ATCGATAAAA CCAAAGCAAT GGGATTATTG CGTGGGTTGA CGGAATTTAA GCGCTCTTAC
GATCTCAACC TGCGGATCAA AAATATGCTG CCCGATCTCT ATGCAGAAGA TCCCGATTTC
TACCGCAGTA TGCGTATTCA GGATCTGGCG CAAGGGATCC ATAAGCTGAT TCGTAAACAC
GATCTTCCCG GTTTGATGTT GCGGGCATTT GATACCTTGC CGGAGATGAT CATGACGCCA
CATCAGGCAT GGCAGAGACA GATTAAAGGT GAAGTAGAAA CCATTGCGCT GGAACAACTG
GTCGGTAGAG TATCGGCAAA TATGATCCTG CCTTATCCAC CCGGCGTACC GCTGTTGATG
CCTGGAGAAA TGCTGACCGA AGAGAGCCGC ACGGTACTCG ATTTTCTACT GATGCTTTGT
TCCGTAGGGC AACATTACCC CGGTTTTGAA ACGGATATTC ACGGCGCGAA ACAGGACGAA
GACGGCATTT ACCGCGTACG AGTCCTAAAA ATGGCGGGAT AA
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| Protein sequence | MNIIAIMGPH GVFYKDEPIK ELESALVAQG FQIIWPQNSV DLLKFIEHNP RICGVIFDWD
EYSLDLCSDI NQLNEYLPLY AFINTHSTMD VSVQDMRMAL WFFEYALGQA EDIAIRMRQY
TNEYLDNITP PFTKALFTYV KERKYTFCTP GHMGGTAYQK SPVGCLFYDF FGGNTLKADV
SISVTELGSL LDHTGPHLEA EEYIARTFGA EQSYIVTNGT STSNKIVGMY AAPSGSTLLI
DRNCHKSLAH LLMMNDVVPV WLKPTRNALG ILGGIPRREF SRDSIEEKVA ATTQAQWPVH
AVITNSTYDG LLYNTDWIKQ TLDVPSIHFD SAWVPYTHFH PIYQGKSGMS GERVAGKVIF
ETQSTHKMLA ALSQASLIHI KGEYDEEAFN EAFMMHTTTS PSYPIVASVE TAAAMLRGNP
GKRLINRSVE RALHFRKEVQ RLREESDGWF FDIWQPPQVD EAECWPVAPG EQWHGFNDAD
ADHMFLDPVK VTILTPGMDE QGNMSEEGIP AALVAKFLDE RGIVVEKTGP YNLLFLFSIG
IDKTKAMGLL RGLTEFKRSY DLNLRIKNML PDLYAEDPDF YRSMRIQDLA QGIHKLIRKH
DLPGLMLRAF DTLPEMIMTP HQAWQRQIKG EVETIALEQL VGRVSANMIL PYPPGVPLLM
PGEMLTEESR TVLDFLLMLC SVGQHYPGFE TDIHGAKQDE DGIYRVRVLK MAG
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