| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0158 |
|---|
| Symbol | ligT |
|---|
| ID | 6146445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 171906 |
|---|
| End bp | 172436 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641615059 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001742275 |
|---|
| Protein GI | 170684250 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0758236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC CGCAACGGCT GTTCTTTGCT ATCGACTTAC CTGCAGAAAT CCGCGAACAG
ATTATCCACT GGCGCGCCAC ACAGTTTCCA CCTGAGGCGG GACGTCCGGT CGCCGCCGAT
AATTTGCATC TGACTCTGGC ATTTTTAGGC GAAGTGAGCG CAGAGAAAGA GAAGGCGCTT
TCTCTTTTAG CCGGACGGAT TCGTCAACCT GGTTTCACAC TCACGCTTGA TGACGCCGGT
CAATGGCTGC GTTCGCGTGT GGTGTGGTTA GGGATGCGAC AGCCGCCACG CGGCTTAATC
CAGCTGGCGA ATATGCTTCG TTCACAAGCT GCACGCAGCG GTTGTTTTCA AAGCAATCGA
CCGTTTCATC CACATATCAC CTTATTGCGC GACGCCAGCG AGGCGGTGAC AATCCCGCCG
CCAGGCTTTA ACTGGTCGTA TACGGTGACG GAGTTCACCC TTTACGCCTC CTCGTTTGCC
CGTGGACGCA CACGCTACAC GCCGCTAAAA CGCTGGGCGC TAACGCAATA A
|
|---|
| Protein sequence | MSEPQRLFFA IDLPAEIREQ IIHWRATQFP PEAGRPVAAD NLHLTLAFLG EVSAEKEKAL
SLLAGRIRQP GFTLTLDDAG QWLRSRVVWL GMRQPPRGLI QLANMLRSQA ARSGCFQSNR
PFHPHITLLR DASEAVTIPP PGFNWSYTVT EFTLYASSFA RGRTRYTPLK RWALTQ
|
|---|
| |