| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0134 |
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| Symbol | gcd |
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| ID | 6146718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 148888 |
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| End bp | 151278 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641615035 |
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| Product | quinoprotein glucose dehydrogenase |
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| Protein accession | YP_001742251 |
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| Protein GI | 170683523 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATTA ACAATACAGG CTCGCGACGA TTACTCGTCA CGCTAACAGC CCTTTTTGCA
GCGCTTTGCG GGCTGTATCT ACTCATTGGC GGAGGCTGGC TGGTCGCGAT TGGCGGCTCC
TGGTACTACC CTATCGCTGG CCTTGTGATG CTCGGCGTCG CCTGGATGCT GTGGCGCAGT
AAACGCGCCG CGCTTTGGCT GTACGCCGCC CTGCTGCTCG GCACCATGAT TTGGGGCGTC
TGGGAAGTTG GTTTCGACTT CTGGGCGCTG ACTCCGCGCA GCGACATTCT GGTCTTCTTC
GGCATCTGGC TGATCCTGCC GTTTGTCTGG CGTCGCCTGG TCATTCCTGC CAGCGGCGCA
GTTGCCGCAC TGGTGGTGGC ATTGCTGATT AGTGGCGGAA TCCTCACCTG GGCGGGATTT
AACGATCCGC AGGAAATCAA CGGCACCTTA AGCGCCGATG CCACACCTGC CGAAGCTATC
TCACCGGTTG CCGATCAGGA CTGGCCTGCG TATGGTCGCA ATCAGGAAGG TCAACGCTTT
TCACCACTGA AGCAAATTAA CGCCGATAAC GTTCACAACC TGAAAGAAGC CTGGGTGTTC
CGTACAGGCG ATGTGAAACA GCCGAACGAT CCGGGCGAAA TCACCAATGA AGTGACGCCG
ATTAAAGTGG GCGATACGCT TTACTTATGT ACCGCTCACC AGCGCCTGTT TGCGCTCGAT
GCCGCCAGCG GCAAAGAGAA ATGGCATTAC GATCCTGAAC TGAAAACCAA CGAGTCCTTC
CAGCACGTAA CCTGTCGTGG CGTCTCTTAT CATGAAGCCA AAGCAGAAAC GGCCTCGCCA
GAAGTGATGG CGGATTGCCC GCGTCGTATC ATTCTTCCGG TCAATGATGG TCGCCTGATT
GCGATTAACG CTGAAAACGG CAAGCTGTGC GAAACCTTCG CTAATAAAGG CGTGCTCAAT
CTGCAAAGCA ATATGCCGGA CACCAAACCG GGTCTGTATG AGCCGACTTC GCCGCCAATT
ATCACCGATA AAACCATCGT GATGGCCGGT TCAGTCACCG ATAACTTCTC AACCCGCGAA
ACGTCTGGCG TGATCCGTGG TTTTGATGTC AACACCGGGG AGCTGCTGTG GGCTTTTGAT
CCGGGCGCGA AAGATCCGAA CGCAATCCCG TCTGACGAAC ACACCTTTAC CTTTAACTCA
CCAAACTCGT GGGCACCAGC GGCCTATGAC GCGAAGCTGG ATCTGGTGTA TCTGCCGATG
GGCGTGACCA CGCCGGATAT CTGGGGCGGT AACCGTACAC CGGAACAGGA ACGTTATGCC
AGCTCGATTC TGGCGCTGAA TGCCACTACC GGGAAACTGG CGTGGAGCTA CCAGACCGTT
CACCACGACC TGTGGGATAT GGATCTTCCG GCACAGCCGA CGCTGGCGGA CATCACCGTT
AATGGTCAGA AAGTGCCAGT CATTTATGCT CCGGCGAAAA CCGGCAACAT TTTTGTGCTC
GATCGTCGTA ATGGCGAACT GGTGGTTCCG GCACCGGAAA AACCGGTTCC CCAAGGTGCT
GCCAAAGGCG ATTACGTAAC CCCAACTCAA CCGTTTTCTG AACTGAGCTT CCGTCCGACG
AAAGATTTGA GCGGTGCGGA TATGTGGGGA GCCACCATGT TTGACCAGCT GGTGTGCCGC
GTGATGTTCC ACCAGATGCG CTATGAAGGC ATTTTCACCC CGCCATCTGA ACAGGGTACG
CTGGTCTTCC CGGGTAACCT GGGGATGTTC GAATGGGGCG GGATTTCCGT TGATCCGAAT
CGTGAAGTGG CGATTGCCAA CCCAATGGCA CTGCCGTTTG TTTCGAAACT GATCCCACGC
GGTCCTGGTA ACCCGATGGA ACAGCCGAAA GATGCCAAAG GCACGGGTAC GGAATCCGGC
ATTCAGCCAC AGTACGGTGT ACCGTATGGT GTCACGCTCA ACCCGTTCCT CTCACCGTTT
GGTCTGCCAT GTAAACAGCC AGCATGGGGC TATATCTCGG CATTGGATCT GAAAACCAAT
GAAGTGGTGT GGAAGAAACG TATTGGTACG CCGCAGGACA GTATGCCATT CCCGATGCCT
GTACCGGTGC CGTTCAATAT GGGTATGCCG ATGCTGGGCG GGCCAATCTC CACAGCGGGT
AACGTACTGT TTATCGCCGC TACGGCAGAT AACTACCTGC GCGCTTACAA CATGAGCAAC
GGTGAAAAAC TGTGGCAGGG CCGTTTACCA GCGGGTGGTC AGGCTACGCC AATGACCTAT
GAAGTGAATG GCAAGCAGTA TGTGGTGATC TCCGCAGGCG GTCACGGTTC ATTTGGTACG
AAGATGGGCG ACTATATTGT GGCTTATGCG CTGCCGGATG ATGTGAAGTA A
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| Protein sequence | MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS
KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA
VAALVVALLI SGGILTWAGF NDPQEINGTL SADATPAEAI SPVADQDWPA YGRNQEGQRF
SPLKQINADN VHNLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD
AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI
AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE
TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV
NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT
KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN
REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF
GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG
NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT
KMGDYIVAYA LPDDVK
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