| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0128 |
|---|
| Symbol | acnB |
|---|
| ID | 6143392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 141902 |
|---|
| End bp | 144421 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641615029 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_001742245 |
|---|
| Protein GI | 170683451 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000196387 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAC TTGTAGAGCT GCTGAAAAAC CCGCCCGCGG GCGAAGAAGA ATTCCTGTTA
GATCTGTTAA CCAACCGTGT TCCCCCTGGC GTCGATGAAG CCGCCTATGT CAAAGCAGGC
TTCCTGGCTG CTGTCGCGAA AGGCGAAGCC AAATCCCCAC TGCTGACTCC GGAAAAAGCC
ATCGAACTGC TGGGCACCAT GCAGGGTGGT TACAACATTC ATCCGCTGAT CGATGCGCTG
GATGATGCCA AACTGGCACC GATCGCTGCC AAAGCACTTT CTCACACGCT GCTGATGTTC
GATAACTTCT ATGACGTAGA AGAGAAAGCC AAAGCAGGTA ACGAATATGC GAAGCAGGTA
ATGCAGTCCT GGGCAGATGC CGAATGGTTC CTGAATCGCC CGGCACTGGC TGAAAAACTG
ACCGTTACCG TCTTCAAAGT CACAGGCGAA ACCAACACCG ATGACCTTTC TCCGGCACCG
GATGCGTGGT CACGCCCGGA TATCCCACTG CACGCGCTGG CGATGCTGAA AAACGCCCGT
GAAGGTATTG AGCCAGATCA GCCTGGTGTT GTTGGTCCGA TCAAACAGAT TGAAGCTCTG
CAACAGAAAG GTTTCCCGCT GGCGTACGTC GGTGACGTTG TGGGTACGGG TTCATCGCGT
AAATCCGCCA CGAACTCCGT TCTGTGGTTT ATGGGCGATG ATATTCCACA TGTGCCGAAC
AAACGCGGCG GTGGTTTGTG CCTCGGCGGT AAAATTGCAC CCATCTTCTT TAACACGATG
GAAGATGCGG GTGCACTGCC AATTGAAGTG GACGTCTCTA ACCTGAACAT GGGTGACGTA
ATTGACGTTT ACCCGTACAA AGGTGAAGTG CGTAACCACG AAACCGGCGA ACTGCTGGCG
ACCTTCGAAC TGAAAACCGA CGTGCTGATT GATGAAGTGC GTGCCGGTGG TCGTATTCCG
CTGATTATCG GGCGTGGCCT GACCACCAAA GCGCGTGAAG CACTTGGTCT GCCGCACAGC
GATGTGTTCC GTCAGGCGAA AGATGTCGCT GAGAGCGATC GCGGCTTCTC GCTGGCGCAG
AAAATGGTCG GTCGTGCCTG CGGTGTGAAA GGCATTCGTC CGGGCGCGTA CTGCGAACCG
AAAATGACTT CTGTTGGTTC TCAGGACACC ACTGGCCCGA TGACCCGTGA TGAACTGAAA
GACCTGGCGT GCCTGGGCTT CTCGGCTGAC CTGGTGATGC AGTCTTTCTG CCACACCGCG
GCGTATCCGA AGCCAGTTGA CGTGAATACG CACCACACGC TGCCGGACTT CATTATGAAC
CGTGGCGGTG TGTCGCTGCG TCCGGGTGAC GGCGTAATCC ACTCCTGGCT GAACCGTATG
CTGCTGCCGG ATACCGTCGG TACCGGTGGT GATTCCCATA CCCGTTTCCC GATCGGTATC
TCTTTCCCGG CGGGTTCTGG TCTGGTGGCA TTTGCAGCCG CAACAGGCGT AATGCCGCTG
GATATGCCGG AATCCGTTCT GGTGCGCTTC AAAGGCAAAA TGCAGCCGGG CATCACCCTG
CGCGACCTGG TTCACGCCAT TCCGCTGTAT GCAATCAAAC AAGGTCTGCT GACCGTTGAG
AAGAAAGGCA AGAAAAACAT CTTCTCTGGT CGCATTCTGG AAATTGAAGG TCTGCCGGAT
CTGAAAGTTG AGCAGGCCTT TGAGCTGACC GATGCGTCCG CTGAGCGTTC TGCCGCTGGT
TGTACTATCA AGCTGAACAA AGAACCGATC ATCGAATACC TGAACTCTAA CATCGTCCTG
CTGAAGTGGA TGATCGCGGA AGGTTACGGC GATCGTCGTA CCCTGGAACG CCGTATTCAG
GGCATGGAAA AATGGCTGGC GAATCCTGAG CTGCTGGAAG CCGATGCAGA TGCGGAATAC
GCGGCAGTGA TCGACATCGA TCTGGCGGAT ATCAAAGAGC CAATCCTCTG TGCACCGAAT
GACCCGGACG ACGCACGTCC GCTGTCTGCG GTACAGGGCG AGAAGATCGA CGAAGTATTT
ATCGGATCTT GCATGACTAA CATCGGTCAC TTCCGTGCTG CTGGTAAACT GCTGGATGCG
CACAAAGGTC AACTGCCGAC CCGCCTGTGG GTGGCACCGC CAACGCGTAT GGACGCCGCG
CAACTGACCG AAGAAGGCTA CTACAGCGTC TTCGGTAAGA GTGGTGCTCG TATCGAGATC
CCTGGCTGTT CCCTGTGTAT GGGTAACCAG GCGCGTGTAG CAGACGGTGC GACGGTGGTT
TCCACCTCTA CCCGTAACTT CCCGAACCGT TTAGGTACTG GCGCGAATGT CTTCCTGGCT
TCTGCTGAAC TGGCTGCTGT TGCGGCGCTG ATTGGCAAAC TGCCGACGCC GGAAGAGTAC
CAGACCTACG TGGCGCAAGT AGATAAAACC GCCGTTGATA CTTACCGTTA TCTGAACTTC
AACCAGCTTT CTCAGTACAC CGAAAAAGCC GATGGGGTGA TTTTCCAGAC TGCGGTTTAA
|
|---|
| Protein sequence | MAALVELLKN PPAGEEEFLL DLLTNRVPPG VDEAAYVKAG FLAAVAKGEA KSPLLTPEKA
IELLGTMQGG YNIHPLIDAL DDAKLAPIAA KALSHTLLMF DNFYDVEEKA KAGNEYAKQV
MQSWADAEWF LNRPALAEKL TVTVFKVTGE TNTDDLSPAP DAWSRPDIPL HALAMLKNAR
EGIEPDQPGV VGPIKQIEAL QQKGFPLAYV GDVVGTGSSR KSATNSVLWF MGDDIPHVPN
KRGGGLCLGG KIAPIFFNTM EDAGALPIEV DVSNLNMGDV IDVYPYKGEV RNHETGELLA
TFELKTDVLI DEVRAGGRIP LIIGRGLTTK AREALGLPHS DVFRQAKDVA ESDRGFSLAQ
KMVGRACGVK GIRPGAYCEP KMTSVGSQDT TGPMTRDELK DLACLGFSAD LVMQSFCHTA
AYPKPVDVNT HHTLPDFIMN RGGVSLRPGD GVIHSWLNRM LLPDTVGTGG DSHTRFPIGI
SFPAGSGLVA FAAATGVMPL DMPESVLVRF KGKMQPGITL RDLVHAIPLY AIKQGLLTVE
KKGKKNIFSG RILEIEGLPD LKVEQAFELT DASAERSAAG CTIKLNKEPI IEYLNSNIVL
LKWMIAEGYG DRRTLERRIQ GMEKWLANPE LLEADADAEY AAVIDIDLAD IKEPILCAPN
DPDDARPLSA VQGEKIDEVF IGSCMTNIGH FRAAGKLLDA HKGQLPTRLW VAPPTRMDAA
QLTEEGYYSV FGKSGARIEI PGCSLCMGNQ ARVADGATVV STSTRNFPNR LGTGANVFLA
SAELAAVAAL IGKLPTPEEY QTYVAQVDKT AVDTYRYLNF NQLSQYTEKA DGVIFQTAV
|
|---|
| |