Gene EcSMS35_0126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0126 
SymbollpdA 
ID6144414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp138154 
End bp139641 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content52% 
IMG OID641615027 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001742243 
Protein GI170679767 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATAATG GGCGTCATAA AAAAAACGTC AGACCCGCCG GAGATAAATA TATAGAGGTC 
ATGATGAGTA CTGAAATCAA AACTCAGGTC GTGGTACTTG GGGCAGGCCC CGCAGGTTAC
TCCGCTGCCT TCCGTTGCGC TGATTTAGGT CTGGAAACCG TAATCGTAGA ACGTTACAAC
ACCCTTGGCG GTGTTTGCCT GAACGTCGGC TGTATCCCTT CTAAAGCACT GCTGCACGTA
GCAAAAGTTA TCGAAGAAGC CAAAGCGCTG GCTGAACACG GTATCGTCTT CGGCGAACCG
AAAACCGATA TCGACAAGAT TCGTACCTGG AAAGAGAAAG TGATCAATCA GCTGACCGGT
GGTCTGGCTG GTATGGCGAA AGGCCGCAAA GTCAAAGTGG TCAACGGTCT GGGTAAATTT
ACCGGGGCTA ACACCCTGGA AGTTGAAGGT GAGAACGGCA AAACCGTGAT CAACTTCGAC
AACGCGATCA TTGCAGCGGG TTCTCGCCCG ATCCAACTGC CGTTTATTCC GCATGAAGAT
CCGCGTATCT GGGACTCCAC TGACGCGCTG GAACTGAAAG AAGTACCAGA ACGCCTGCTG
GTAATGGGTG GCGGTATCAT CGGTCTGGAA ATGGGCACCG TATACCACGC GCTGGGTTCA
CAGATTGACG TGGTTGAAAT GTTCGACCAG GTCATCCCGG CAGCTGATAA AGACATCGTT
AAAGTCTTCA CCAAGCGTAT CAGCAAGAAA TTCAACCTGA TGCTGGAAAC CAAAGTTACC
GCCGTTGAAG CGAAAGAAGA CGGTATTTAT GTGACGATGG AAGGCAAAAA AGCACCCGCT
GAACCGCAGC GTTACGACGC CGTGCTGGTA GCGATTGGTC GTGTGCCGAA CGGTAAAAAC
CTCGACGCAG GCAAAGCTGG CGTGGAAGTG GACGACCGTG GTTTCATCCG CGTTGACAAA
CAGCTGCGTA CCAACGTACC GCACATCTTT GCTATCGGCG ATATCGTCGG TCAGCCGATG
CTGGCACACA AAGGTGTTCA CGAAGGTCAT GTTGCCGCTG AAGTTATTGC CGGTAAGAAA
CACTACTTCG ATCCGAAAGT TATCCCGTCT ATCGCCTATA CCGAACCAGA AGTTGCATGG
GTGGGTCTGA CTGAGAAAGA AGCGAAAGAG AAAGGCATCA GCTACGAAAC CGCCACCTTC
CCGTGGGCTG CTTCTGGTCG AGCTATCGCT TCTGACTGCG CAGATGGTAT GACCAAGCTG
ATTTTCGACA AAGAATCTCA CCGTGTGATC GGTGGTGCGA TTGTCGGTAC TAACGGCGGC
GAGCTGCTGG GTGAAATCGG TCTGGCAATC GAAATGGGTT GTGATGCTGA AGACATCGCA
CTGACCATCC ACGCGCACCC GACTCTGCAC GAGTCTGTGG GCCTGGCGGC AGAAGTGTTC
GAAGGTAGCA TTACCGACCT GCCGAACCCG AAAGCGAAGA AGAAGTAA
 
Protein sequence
MDNGRHKKNV RPAGDKYIEV MMSTEIKTQV VVLGAGPAGY SAAFRCADLG LETVIVERYN 
TLGGVCLNVG CIPSKALLHV AKVIEEAKAL AEHGIVFGEP KTDIDKIRTW KEKVINQLTG
GLAGMAKGRK VKVVNGLGKF TGANTLEVEG ENGKTVINFD NAIIAAGSRP IQLPFIPHED
PRIWDSTDAL ELKEVPERLL VMGGGIIGLE MGTVYHALGS QIDVVEMFDQ VIPAADKDIV
KVFTKRISKK FNLMLETKVT AVEAKEDGIY VTMEGKKAPA EPQRYDAVLV AIGRVPNGKN
LDAGKAGVEV DDRGFIRVDK QLRTNVPHIF AIGDIVGQPM LAHKGVHEGH VAAEVIAGKK
HYFDPKVIPS IAYTEPEVAW VGLTEKEAKE KGISYETATF PWAASGRAIA SDCADGMTKL
IFDKESHRVI GGAIVGTNGG ELLGEIGLAI EMGCDAEDIA LTIHAHPTLH ESVGLAAEVF
EGSITDLPNP KAKKK