| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0116 |
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| Symbol | |
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| ID | 6144545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 128593 |
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| End bp | 130374 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641615017 |
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| Product | putative S-type colicin |
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| Protein accession | YP_001742233 |
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| Protein GI | 170680765 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.305649 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGATA TTGTTTACCT GAGAATAATC GGTGAGAAGC AGGGCGATAT TTCTTCAGGC
TGTGGGACGT ATGCGTCGGT TGGTAATCGC TGGCAGGTTG GCCATGAAGA TGAAATTTTT
GCCTTTGCAC TCACCAACAC CATTACCAGT ACTGGTAAAG GCGTTAATCT GCAGGGGCTA
CAATTTTGCA AACTCATTGA TAAAAGCTCA CCGCTACTGT CTAATGCCAT CAATCAGAAT
GAGCGGTTAT TTATTGAAAT CGATTTGTAT CGTATAAATA AAAGCGGGCG CTGGGAACGG
TATTATTATA TTCAGCTAAG AAATGCTTCA TTAACTGCTA TTCATGTAAA CATTTCTGAC
AATAATCTTC CTACCGAATG TGTAACTGTC GATTATGACT ACATATTATG TAAACATCTA
ATAGCCAATA CGGAATTTGA CTGGTTGGCC TTTCCTGCTG GCCATAATAG CTTATTTATT
CCACCTAAAA ACCCACCTGC CAGTAATCTT AACCCTGAGC CTCTACCAGT TGTTAACCTT
CCACTCTCTC CACCAGCGGT TAAACCGGTC TATGCCAAAT CCTGTCTGAA GGAGAAGGGA
TGTACAGATG CCGGAACGGC AGAAGAACCC GCTGAAAACT TCGGGCAAGT AGCGATTTTT
GCTCTGCCAG TGGTTGATGA CTGCTGTGGA TACCACCATC CCGAGGCTAA CGATGTCGGG
CAACCCGCAG AAGCTCAAAC CATGCTACTG TTTCCGGGTA GCGTATTGGC GGCTCAAATA
TGGGGAAAAT GGTCGCTCAG TGGCATACTC AGTGCAACCC GCGGCTCTTA CATCGGTGCG
TTGGCATCTG CTTTGTATAT TCCCTCTGCG GGCGAGGGCA GTGCTCGCGT GCCCGGACGT
GATGAGTTCT GGTATGAGGA AGAACTGCAG CAGAAAGCAC TAGCAGGCAG TACCGCCACC
ACCCGGGTAC GTTTTTTCTG GGGAACTGAC ATTCACGGCA AGCCTCAGGT GTATGGTGTT
CATACGGGTG AAGGTACGCC GTATGAAAAC GTCCGCGTGG CGAACATGCA GTGGAACGAG
CAGACGCAGC GTTATGAATT TACCCCCGCT CACGATGTCG ATGGCCCCCT GATTACCTGG
ACGCCGGAAA ATCCGGAACA TGGGAATGTT CCGGGCCATA CCGGTAACGA CAGGCCGCCG
CTGGAGCAGC CCACCATTCT GGTGACGCCG ATTCCGGACG GCACTGATAC CTATAGCACG
CCGCCATTCC CGGTTCCTGA TCCGAAAGAA TTCAACGATT ATATTCTGGT TTTTCCGGCG
GGATCCGGTA TTAAGCCCAT CTATGTTTAC CTGAAGGAGG ATCCGCGAAA GCTGCCTGGT
GTTGTAACAG GGCGCGGCGT CCCGCTTTCA CCAGGAACTC GCTGGCTGGA TATGTCGGTA
TCCAATAACG GCAACGGCGC ACCAATCCCG GCACATATTG CTGATAAATT GCGCGGACGG
GAGTTTAAAA CCTTTGATGA GTTTCGCGAG GCGCTGTGGC TGGAGGTGAG TCAGGATCCG
GAGTTGATAG CGCAGTTTTC AAGTGGTAAC CAAACACGTA TAAAACAAGG ATTAACCGCA
AAAGCACCTA TTGACGGTTG GCATTATGGC CCTAAAGAAA TAGTTAAAAA ATTCCAGATA
CATCATCGTG TTGCAATTGA ATATGGCGGC AGCGTATACG ATATTGATAA TTTACGAATT
GTTACCCCCA GACTACACGA TGAGATTCAC TACAGGAGAT AA
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| Protein sequence | MGDIVYLRII GEKQGDISSG CGTYASVGNR WQVGHEDEIF AFALTNTITS TGKGVNLQGL
QFCKLIDKSS PLLSNAINQN ERLFIEIDLY RINKSGRWER YYYIQLRNAS LTAIHVNISD
NNLPTECVTV DYDYILCKHL IANTEFDWLA FPAGHNSLFI PPKNPPASNL NPEPLPVVNL
PLSPPAVKPV YAKSCLKEKG CTDAGTAEEP AENFGQVAIF ALPVVDDCCG YHHPEANDVG
QPAEAQTMLL FPGSVLAAQI WGKWSLSGIL SATRGSYIGA LASALYIPSA GEGSARVPGR
DEFWYEEELQ QKALAGSTAT TRVRFFWGTD IHGKPQVYGV HTGEGTPYEN VRVANMQWNE
QTQRYEFTPA HDVDGPLITW TPENPEHGNV PGHTGNDRPP LEQPTILVTP IPDGTDTYST
PPFPVPDPKE FNDYILVFPA GSGIKPIYVY LKEDPRKLPG VVTGRGVPLS PGTRWLDMSV
SNNGNGAPIP AHIADKLRGR EFKTFDEFRE ALWLEVSQDP ELIAQFSSGN QTRIKQGLTA
KAPIDGWHYG PKEIVKKFQI HHRVAIEYGG SVYDIDNLRI VTPRLHDEIH YRR
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