| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0106 |
|---|
| Symbol | |
|---|
| ID | 6147232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 118372 |
|---|
| End bp | 119115 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641615007 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001742223 |
|---|
| Protein GI | 170683836 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4582] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000133684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.370624 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCC AGGTCCTTTT TGAACATCCA CTAAATGAAA AAATGCGTAC ATGGCTGCGC
ATTGAGTTTT TGATTCAGCA ACTCACCGTT AATCTACCCA TCGTTGACCA CGCTGGCGCG
CTGCATTTCT TCCGTAATGT CAGTGAATTA CTGGATGTTT TCGAGCGCGG CGAAGTCCGC
ACTGAGCTGT TGAAAGAACT TGACCGGCAG CAACGTAAAC TCCAGACCTG GATTGGCGTG
CCTGGCGTGG ACCAGAGCCG TATTGAAGCA TTAATTCAGC AGTTAAAAGC GGCGGGGAGC
GTATTAATTT CCGCGCCGCG TATCGGGCAA TTTCTGCGTG AAGATCGTTT GATTGCTCTG
GTGCGTCAGC GACTGAGCAT CCCAGGCGGC TGTTGTAGCT TTGATTTACC TACATTGCAC
ATTTGGCTGC ATCTACCCCA GGCGCAGCGC GACAGCCAGG TAGAAACCTG GATTGCCAGC
CTGAACCCGC TCACCCAGGC ACTTACCATG GTGCTGGATT TAATTCGCCA GTCGGCCCCC
TTCCGTAAAC AAACCAGCCT GAATGGTTTT TATCAGGATA ACGGTGGCGA TGCCGACTTG
CTGCGCCTGA ATCTGTCACT CGATTCACAG CTTTATCCGC AAATTTCCGG TCATAAGAGC
CGTTTTGCCA TTCGTTTTAT GCCGCTGGAC AGTGAAAACG GACAGGTACC AGAACGTCTG
GATTTCGAAC TGGCCTGTTG CTAA
|
|---|
| Protein sequence | MQTQVLFEHP LNEKMRTWLR IEFLIQQLTV NLPIVDHAGA LHFFRNVSEL LDVFERGEVR
TELLKELDRQ QRKLQTWIGV PGVDQSRIEA LIQQLKAAGS VLISAPRIGQ FLREDRLIAL
VRQRLSIPGG CCSFDLPTLH IWLHLPQAQR DSQVETWIAS LNPLTQALTM VLDLIRQSAP
FRKQTSLNGF YQDNGGDADL LRLNLSLDSQ LYPQISGHKS RFAIRFMPLD SENGQVPERL
DFELACC
|
|---|
| |