Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0097 |
Symbol | ddl |
ID | 6142986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 108866 |
End bp | 109786 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641614998 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_001742214 |
Protein GI | 170683837 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00164222 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGATA AAATCGCGGT CCTGTTGGGC GGGACCTCCG CTGAGCGGGA AGTTTCTCTG AATTCTGGCG CAGCGGTGTT AGCCGGGCTG CGTGAAGGCG GTATTGACGC GTATCCTGTC GACCCGAAAG AAGTCGACGT GACGCAACTG AAGTCGATGG GTTTTCAGAA AGTGTTTATC GCGCTACACG GTCGCGGCGG TGAAGATGGT ACGCTGCAGG GAATGCTCGA GCTGATGGGC TTGCCTTATA CCGGCAGCGG AGTGATGGCA TCTGCGCTTT CAATGGATAA ACTACGCAGC AAACTTCTGT GGCAGGGTGC CGGTTTACCG GTCGCGCCGT GGGTAGCGTT AACCCGCGCA GAGTTTGAAA AAGGCCTTAA CGATCAGCAG TTAGCAGAAA TTTCTTCTCT GGGTTTGCCG GTTATCGTTA AGCCGAGCCG CGAAGGTTCC AGTGTGGGAA TGTCAAAAGT AGTAGCAGAA AATGCTCTAC AAGATGCATT AAGATTGGCA TTTCAGCACG ATGAAGAAGT ATTGATTGAA AAATGGCTAA GTGGGCCGGA GTTCACGGTT GCGATACTCG GTGAAGAAAT TTTACCGTCA ATACGTATTC AACCGGCCGG AACCTTCTAT GATTATGAGG CGAAGTATCT CTCTGATGAG ACACAGTATT TCTGCCCCGC AGGTCTGGAA GCGTTACAAG AGGCCAATTT GCAGGCATTA GTGCTAAAAG CATGGACGAC GTTAGGTTGC AAAGGATGGG GACGTATTGA CGTTATGCTG GACAGTGATG GACAGTTTTA TCTGCTGGAA GCCAATACCT CACCGGGTAT GACCAGCCAC AGTCTGGTGC CGATGGCGGC ACGTCAGGCA GGTATGAGCT TCTCGCAGTT GGTAGTACGA ATTCTGGAAC TGGCGGACTA A
|
Protein sequence | MTDKIAVLLG GTSAEREVSL NSGAAVLAGL REGGIDAYPV DPKEVDVTQL KSMGFQKVFI ALHGRGGEDG TLQGMLELMG LPYTGSGVMA SALSMDKLRS KLLWQGAGLP VAPWVALTRA EFEKGLNDQQ LAEISSLGLP VIVKPSREGS SVGMSKVVAE NALQDALRLA FQHDEEVLIE KWLSGPEFTV AILGEEILPS IRIQPAGTFY DYEAKYLSDE TQYFCPAGLE ALQEANLQAL VLKAWTTLGC KGWGRIDVML DSDGQFYLLE ANTSPGMTSH SLVPMAARQA GMSFSQLVVR ILELAD
|
| |