Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0093 |
Symbol | murD |
ID | 6143343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 103720 |
End bp | 105036 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641614994 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001742210 |
Protein GI | 170681706 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.388971 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGATT ACCAGGGTAA AAATGTCGTC ATTATCGGCC TGGGCCTCAC CGGGCTTTCT TGCGTGGACT TTTTCCTCGC TCGCGGTGTG ACGCCGCGCG TTATGGATAC GCGTATGACA CCGCCTGGCC TGGATAAATT ACCCGAAGCT GTAGAACGCC ACACGGGCGG TCTGAATGAT GAATGGCTGA TGGCGGCCGA TCTGATTGTC GCCAGTCCCG GTATTGCACT GGCGCATCCA TCCTTAAGCG CTGCCGCTGA TGCCGGAATC GAAATCGTTG GCGATATCGA GCTGTTCTGT CGTGAAGCAC AAGCACCGAT TGTGGCGATC ACCGGTTCTA ACGGCAAAAG CACGGTCACC ACGCTAGTGG GTGAAATGGC GAAAGCGGCG GGGGTTAACG TTGGTGTGGG TGGCAATATT GGCCTGCCTG CGTTGATGCT GCTGGATGAT GAGTGCGAAC TGTACGTGCT GGAGCTGTCG AGCTTCCAGC TTGAAACCAC CTCCAGTTTA CAGGCGGTAG CAGCGACCAT TCTGAACGTA ACTGAAGATC ATATGGATCG CTATCCGTTT GGTTTACAAC AGTATCGTGC AGCAAAACTG CGCATTTACG AAAACGCAAA AATTTGCGTG GTTAATGCTG ATGATGCCTT AACAATGCCG ATTCGCGGTG CGGATGAACG CTGCGTCAGC TTTGGCGTCA ACATGGGTGA CTATCACCTG AATCATCAGC AGGGTGAAAC CTGGCTGCGG GTGAAGGGCG AGAAAGTGCT GAACGTGAAA GAAATGAAAC TTTCCGGGCA GCATAACTAC ACCAATGCAC TGGCAGCTCT GGCACTGGCA GATGCCGCTG GTTTGCCGCG CGCCAGCAGC CTGAAAGCGT TAACCACATT CACTGGTCTG CCGCATCGCT TTGAAGTTGT GCTGGAGCAT AACGGTGTGC GCTGGATTAA CGATTCAAAA GCGACCAACG TCGGCAGTAC GGAAGCGGCA CTGAATGGCC TGCACGTAGA CGGCACGCTG CATTTGTTGC TGGGCGGCGA TGGTAAATCG GCAGATTTTA GCCCACTGGC GCGTTACCTG AATGGCGATA ACGTACGTCT GTATTGTTTC GGTCGGGACG GCGCGCAGCT GGCGGCGCTA CGCCCGGAAG TGGCAGAACA AACCGAAACC ATGGAACAGG CGATGCGCTT GCTGGCTCCG CGTGTTCAGC CGGGCGATAT GGTTCTGCTC TCCCCGGCCT GTGCCAGCCT TGATCAGTTC AAGAACTTTG AACAACGAGG CAATGAGTTT GCCCGTCTGG CGAAGGAGTT AGGTTGA
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Protein sequence | MADYQGKNVV IIGLGLTGLS CVDFFLARGV TPRVMDTRMT PPGLDKLPEA VERHTGGLND EWLMAADLIV ASPGIALAHP SLSAAADAGI EIVGDIELFC REAQAPIVAI TGSNGKSTVT TLVGEMAKAA GVNVGVGGNI GLPALMLLDD ECELYVLELS SFQLETTSSL QAVAATILNV TEDHMDRYPF GLQQYRAAKL RIYENAKICV VNADDALTMP IRGADERCVS FGVNMGDYHL NHQQGETWLR VKGEKVLNVK EMKLSGQHNY TNALAALALA DAAGLPRASS LKALTTFTGL PHRFEVVLEH NGVRWINDSK ATNVGSTEAA LNGLHVDGTL HLLLGGDGKS ADFSPLARYL NGDNVRLYCF GRDGAQLAAL RPEVAEQTET MEQAMRLLAP RVQPGDMVLL SPACASLDQF KNFEQRGNEF ARLAKELG
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