| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0056 |
|---|
| Symbol | pdxA |
|---|
| ID | 6147478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 58963 |
|---|
| End bp | 59952 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641614957 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_001742173 |
|---|
| Protein GI | 170683725 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.118271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.401254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAA CCCAACGTGT TGTGATCACT CCCGGCGAGC CCGCCGGGAT TGGCCCGGAC
TTAATTGTCC AGCTTGCACA GCGTGAGTGG CCGGTCGAAC TGGTTGTTTG TGCCGATGCC
ACTCTCCTTA CCGACCGGGC AGCGATGCTC GGTTTGCCGC TCACCCTCCG CCCTTATTCC
CCCAACTCCC CTGCACAACC GCAAACTGCG GGCACATTAA CGCTACTTCC TGTCGCGCTA
CGTGAATCTG TCACTGCGGG GCAGTTAGCG GTTGAAAATG GGCATTATGT GGTGGAAACG
CTGGCGCGAG CGTGTGATGG CTGTCTGAAC GGTGAATTTG CTGCGCTGAT CACAGGCCCC
GTGCATAAAG GCGTCATTAA CGACGCAGGC ATTCCGTTTA CCGGTCATAC CGAGTTTTTC
GAAGAGCGTT CGCAGGCGAA AAAAGTGGTG ATGATGCTGG CAACCGAAGA ACTTCGCGTG
GCGCTGGCAA CGACGCATTT ACCGCTGCGC GATATCGCAG ATGCTATCAC CCCTGCGCTT
TTGCACGAAG TGATTGCTAT TTTGCATCAC GATTTGCGGA CCAAATTTGG TATTGCCGAA
CCGCGCATTC TGGTCTGCGG GCTGAATCCG CACGCGGGCG AAGGCGGTCA TATGGGTACG
GAAGAGATAG ACACCATTAT TCCGGTGCTC GACGAGCTGC GGGCGCAGGG GATGAAACTC
AACGGGCCGC TGCCTGCCGA TACCCTGTTT CAGCCGAAAT ATCTCGATAA CGCCGACGCC
GTGCTGGCGA TGTACCACGA TCAGGGTCTT CCCGTGCTAA AATACCAGGG CTTCGGGCGC
GGTGTGAACA TTACGCTGGG CCTGCCCTTT ATTCGCACAT CAGTGGACCA CGGCACCGCG
CTTGAACTGG CGGGACGTGG CAAAGCCGAT GTCGGCAGTT TTATTACGGC GCTTAATCTC
GCCATCAAAA TGATTGTTAA CACCCAATGA
|
|---|
| Protein sequence | MVKTQRVVIT PGEPAGIGPD LIVQLAQREW PVELVVCADA TLLTDRAAML GLPLTLRPYS
PNSPAQPQTA GTLTLLPVAL RESVTAGQLA VENGHYVVET LARACDGCLN GEFAALITGP
VHKGVINDAG IPFTGHTEFF EERSQAKKVV MMLATEELRV ALATTHLPLR DIADAITPAL
LHEVIAILHH DLRTKFGIAE PRILVCGLNP HAGEGGHMGT EEIDTIIPVL DELRAQGMKL
NGPLPADTLF QPKYLDNADA VLAMYHDQGL PVLKYQGFGR GVNITLGLPF IRTSVDHGTA
LELAGRGKAD VGSFITALNL AIKMIVNTQ
|
|---|
| |