| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0081 |
|---|
| Symbol | sitD_1 |
|---|
| ID | 6106550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010488 |
|---|
| Strand | - |
|---|
| Start bp | 61386 |
|---|
| End bp | 62243 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641614828 |
|---|
| Product | iron/manganese transport system membrane protein SitD |
|---|
| Protein accession | YP_001739969 |
|---|
| Protein GI | 170650804 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000241548 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCAT TATTACTGGA GCCACTGCAG TTCACCTTTA TGAGTCACGC ACTGCTGATT
TCACTGGTAG TTTCCATACC CTGTGCGCTG CTGTCGGTCT TTCTGGTCCT GAAAAGTTGG
GCACTGATGG GTGACGCGAT GAGTCATGCG GTTTTTCCTG GCATCGTGCT TGCCTGGATT
CTGGGGTTAC CTCTGGCTAC AGGGGCATTC GTCGCCGGAG TATTCTGTGC GGTGGCGACG
GGATACCTGA AAGACAACAG CCGAATCAAG CAAGATACAG TGATGGGGAT TGTTTTTTCT
GGCATGTTTG CCGCAGGTCT GATCTTGTAT ATTGCAGTCA AACCAGACGT ACATCTTGAT
CATATTCTTT TCGGCGACAT GCTCGGGATA ACCATCGGCG ATATAATCCA GACGGTGATT
ATTGCCGGAC TGGTTACACT TGTTATTAGC GTAAAATGGC GGGATTTTTT GCTGTTCAGC
TTTGATTATC AACAGGCGCA GGCAAGCGGT TTGCATACGA GATGGCTGCA TTATGGGCTG
CTGTGCATGG TCTCCCTGAC CATTGTGGCG ACGCTGAAAG CGGTAGGTAT CATTCTCTCT
ATTTCTCTTC TCATTGCGCC TGGTGCCATT GCGGTACTCC TGACACAACG CTTTCATATT
GCGCTCCTGC TGGCAACTGG CATATCGATA TTGGTCTCAA TGACTGGTGT CTGGCTGTCC
TTTTTTATCG ACAGCGCGTC AGCTCCGACA ATTGTTGTCT TATTCGCGGT CATGTTCATC
ATGACGTTTA CCGTTACCAG CATCAACGCA CGCACAAAGG AAAATGCCGA ACCACGGGAT
TTGTTATCAT CCGATTAG
|
|---|
| Protein sequence | MMALLLEPLQ FTFMSHALLI SLVVSIPCAL LSVFLVLKSW ALMGDAMSHA VFPGIVLAWI
LGLPLATGAF VAGVFCAVAT GYLKDNSRIK QDTVMGIVFS GMFAAGLILY IAVKPDVHLD
HILFGDMLGI TIGDIIQTVI IAGLVTLVIS VKWRDFLLFS FDYQQAQASG LHTRWLHYGL
LCMVSLTIVA TLKAVGIILS ISLLIAPGAI AVLLTQRFHI ALLLATGISI LVSMTGVWLS
FFIDSASAPT IVVLFAVMFI MTFTVTSINA RTKENAEPRD LLSSD
|
|---|
| |