| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0072 |
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| Symbol | sopB |
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| ID | 6106535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | - |
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| Start bp | 53664 |
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| End bp | 54635 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641614819 |
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| Product | plasmid-partitioning protein |
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| Protein accession | YP_001739960 |
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| Protein GI | 170650790 |
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| COG category | [K] Transcription |
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| COG ID | [COG1475] Predicted transcriptional regulators |
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| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0000633113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAGCGTG CGCCTGTCAT TCCAAAACAT ACGATTAAGA CTCAACCGCT TGAAGATACT
CCGTCATCGG CACCAGCTGC ACCGATGGTG GATTCGTTAA TTGCGCGCGT AGGAGCTATG
GCTCGTGGCA ATGCTATTAC TTTGCCTGTA TGTGGTAGGG ACGTGAAATT TACCCTTGAG
GTGCTCCGGG GAGATAGTGT TGAGAAGACC TCTCGGGTAT GGTCAGGTAA TGAACGTGAC
CAGGAACTGC TTACCGAAGA CGCCCTGGAT GATCTTATCC CTTCTTTTCT ACTGACAGGT
CAGCAGACAC CAGCATTCGG TCGAAGAGTG TCTGGGGTCA TAGAAATTGC CGATGGGAGC
CGCCGTCGTA AAGCTGCTGC ACTTACAGAA AGTGATTATC GAGTTCTGGT TGGTGAGCTG
GATGATGAGC AGATGGCTGC ATTGTCCAGA TTGGGTAACG ATTATAGGCC AACAAGTGCT
TATGAACGTG GTCAGCGTTA TGCAAGCCGA TTGCAGAATG AATTTGCTGG AAATATTTCT
GCGCTGGCTG ATGCAGAAAA TATTTCACGT AAGATTATTA CCCGCTGTAT CAACACAGCT
AAACTGCCTA AATCAGTTGT TGCTCTTTTT TCTCATCCCG GTGAACTATC TGCCCGGTCA
GGTGATGCAC TTCAAAGAGC TTTTACAGAT AAAGAAGAAT TACTTAAGCA GCAGGCATCT
AACCTTCACG AGCAGAAAAA AGCAGGAGTG ATATTTGAAG CTGAAGAAGT CATCACTCTT
TTAACGTCTG TGCTTAAAAC GTCATCTGCC TCAAGAACTA GCTTAAGCTC ACGACATCAG
TTTGCTCCTG GAGCGACAGT GTTGTACAAG GGCGATAAAA TGGTGTTAAA CCTAGATAGA
TCTCGTATTC CAACTGAGTG TATAGAGAGA ATTGAAGCCA TTCTTAAGGA ACTTGAAAAA
GCGGCACTTT GA
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| Protein sequence | MKRAPVIPKH TIKTQPLEDT PSSAPAAPMV DSLIARVGAM ARGNAITLPV CGRDVKFTLE
VLRGDSVEKT SRVWSGNERD QELLTEDALD DLIPSFLLTG QQTPAFGRRV SGVIEIADGS
RRRKAAALTE SDYRVLVGEL DDEQMAALSR LGNDYRPTSA YERGQRYASR LQNEFAGNIS
ALADAENISR KIITRCINTA KLPKSVVALF SHPGELSARS GDALQRAFTD KEELLKQQAS
NLHEQKKAGV IFEAEEVITL LTSVLKTSSA SRTSLSSRHQ FAPGATVLYK GDKMVLNLDR
SRIPTECIER IEAILKELEK AAL
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