| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1676 |
|---|
| Symbol | |
|---|
| ID | 6093126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 1698931 |
|---|
| End bp | 1700043 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642488877 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001739694 |
|---|
| Protein GI | 170289456 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000661006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGG TACTGGTAAC GGTTCTTCTT GTATTTACGG TTTTGAGTCT TTTCTCGGCC
GTTAGGATCG CTGTGATTCT TCCAATGACG GGTGGTATTT CCGCTTTTGG AAGAATGGTG
TGGGAAGGAA TTCAGATCGC TCACGAAGAG AAACCAACAG TTTTGGGAGA AGAGGTAGAA
CTCGTTCTCC TCGACACCAG AAGTGAAAAA ACAGAAGCAG CGAACGCAGC AGCAAGAGCC
ATTGACAAAG AAAAGGTCCT CGCAATAATC GGTGAAGTGG CCAGTGCACA TTCTCTTGCC
GTAGCACCTA TTGCAGAAGA GAACAAAGTT CCTATGGTGA CTCCTGCCTC CACGAATCCA
CTCGTAACAC AGGGAAGAAA GTTCGTATCC AGGGTTTGTT TCATCGACCC GTTCCAGGGA
TCAGCCATGG CAGTATTCGC TTACAAAAAT CTGGGTGCAA AAAGAGTAGC TGTGTTCACG
GATGTCGAGC AGGACTACAG CGTCGGACTC TCTAATTTCT TCAAAGACAA GTTCACTGAA
CTCGGCGGAC AGGTGAAGAG CGTGCTCTTC AGAAGCGGTG ATCAGGACTT TTCCGCACAG
CTTTCCGTTG CGATGTCGTT CAACCCGGAT GCAATCTACA TAACAGGGTA CTACCCGGAG
ATCGCCCTCA TCTCCAGACA GGCAAGACAG CTTGGATTCA CCGGTTACAT TCTGGCAGGT
GATGGTGCAG ACGCACCGGA ACTCATAGAA ATCGGTGGAG AAGCAGTGGA AGGACTCCTC
TTCACCACAC ACTACCATCC GAAGGCAGCC AGCAACCCTG TTGCAAAGAA GTTCGTTGAA
GTGTACAAGG AGAAATACGG AAAAGAACCA GCTGCGCTCA ACGCTCTCGG ATACGATGCT
TACATGGTGC TTCTCGACGC GATCGAAAGG GCAGGAAGCT TTGACAGGGA AAAGATCGCT
GAAGAGATCA GAAAAACAGA GAATTTCAAC GGTGCCAGCG GTATCATAAA CATCGACAAG
AACGGAGACG CCATCAAATC CGTCGTTGTA AACGTTGTGA AGAACGGTTC AGTTGACTTT
GAGGCTGTCA TCAATCCTGA TGATCTCAAG TAA
|
|---|
| Protein sequence | MRKVLVTVLL VFTVLSLFSA VRIAVILPMT GGISAFGRMV WEGIQIAHEE KPTVLGEEVE
LVLLDTRSEK TEAANAAARA IDKEKVLAII GEVASAHSLA VAPIAEENKV PMVTPASTNP
LVTQGRKFVS RVCFIDPFQG SAMAVFAYKN LGAKRVAVFT DVEQDYSVGL SNFFKDKFTE
LGGQVKSVLF RSGDQDFSAQ LSVAMSFNPD AIYITGYYPE IALISRQARQ LGFTGYILAG
DGADAPELIE IGGEAVEGLL FTTHYHPKAA SNPVAKKFVE VYKEKYGKEP AALNALGYDA
YMVLLDAIER AGSFDREKIA EEIRKTENFN GASGIINIDK NGDAIKSVVV NVVKNGSVDF
EAVINPDDLK
|
|---|
| |