| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1344 |
|---|
| Symbol | |
|---|
| ID | 6092786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 1376314 |
|---|
| End bp | 1378011 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642488546 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_001739371 |
|---|
| Protein GI | 170289133 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0114942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTCCTC GAGAGGTCAT CGAGGAAATA AAGGAAAAAG TTGACATCGT AGAAGTCATT
TCAGAGTATG TGAATCTCAC CCGGGTAGGT TCTTCCTACA GGGCTCTCTG TCCCTTTCAT
TCAGAAACCA ATCCTTCTTT TTACGTTCAT CCGGGTTTGA AGATATACCA TTGTTTCGGC
TGTGGTGCGA GCGGGGATGT CATCAAATTT CTTCAGGAAA TGGAAGGGAT CAGTTTCCAG
GAAGCGCTGG AAAGACTTGC CAAGAGAGCT GGGATTGATC TTTCTCTCTA CAGAACAGAA
GGGACTTCTG AATACGGAAA ATACATTTGT TTGTACGAAG AAACGTGGAA AAGGTACGTC
AAAGAGCTGG AGAAATCGAA AGAGGCAAAA GACTATTTAA AAAGCAGAGG CTTTTCTGAA
GAAGATATAG CAAAGTTTGG CTTTGGGTAC GTTCCTAAGA GATCCAGCAT CTCTATAGAA
GTTGCAGAAG GCATGAACAT AATACCGGAA GAACTTGTCA GATACGGTAT CGCGCTGAAA
AAGGGTGATC GATTTGTTGA CAGATTCGAA GGAAGAATCG TTGTTCCAAT AAAGAACGAC
AGTGGACATA TTGTGGCTTT TGGTGGGCGT GCTCTCGGCA ACGAAGAACC AAAGTATTTG
AACTCTCCAG AGACCAGGTA TTTTTCGAAG AAGAAAATCC TTTTTCTCTT CGATGAGGCG
AAAAAAGTGG CAAAAGAGGT CGGCTTTTTC GTCATCACTG AAGGCTACTT CGACGCGCTC
GCATTCAGAA GGGATGGAAT ACCAACGGCG GTCGCTGTTC TTGGGGCGAG TCTTTCAAGG
GAAGCAATTC TGAAGCTTTC GGCGTATTCG AAAAATGTCA TACTGTGTTT CGATAATGAC
AGAGCAGGCT TCAGAGCCAC TCTCAAATCC CTCGAAGACC TCCTTGAATA CGAATTCAAT
GTGCTTGTAG CAACCCCCTC TCCTTACAAA GATCCGGATG AACTCTTTCA GAAGGAAGGG
GAAGGTTCGC TGAAAAAGAT GCTGAAAAAC TCACGTTCGT TCGAATATTT CCTGGTGACT
GCTGGTGAAG TCTTCTTTGA CAAAAACAGC CCCGCGGGTG TGAGATCCTA CCTTTCTTTC
CTCAAAGGTT GGGTCCAGAG GATGAGAAAG AAAGGATATT TGAAACATGT AGAAAATCTC
GTGAAGGAAG CTTCGGCTTC TCTCCAGATA CCAGAAAACC AGATTTTGAA CTTTTTTGAG
AGTGAAAAGT CTAACACTAT GCTTGTTCAT GGATCCAGGT CGTCAAAGGT TTACGATGAG
GGAAGAGGAC TTGCTTACCT GTTTTTGAAC TACGAAGATT TGAGGGGAAA GATTCTGGAG
CTGGACTTAG AGGTACTGGA AGATGAAAAC GCGAAAGAAT TTTTCAAGAG GGTTTCATCC
GATGAAGATT TAAGCGAAGC TATAGAAAAC TTTCCAAAAG AGTTGAAAGA TTGGGTTTTT
GAAACGATAG AAAGCATTCC TCCTCCAAAG GATCCCGAGA AATTTCTCGC TGACCTCTCC
GAAAAGTTGA AAATCCGGCG GATAGAGAGA CGTATTGCAG AAATAGATGA GATGATAAAA
AAGGTTTCAA ACGATGAGGA AAGGCGTCTT CTTCTCTCTA TGAAGTTGGA TCTCCTCAGA
AAAATAAAGA GGAGGTGA
|
|---|
| Protein sequence | MIPREVIEEI KEKVDIVEVI SEYVNLTRVG SSYRALCPFH SETNPSFYVH PGLKIYHCFG
CGASGDVIKF LQEMEGISFQ EALERLAKRA GIDLSLYRTE GTSEYGKYIC LYEETWKRYV
KELEKSKEAK DYLKSRGFSE EDIAKFGFGY VPKRSSISIE VAEGMNIIPE ELVRYGIALK
KGDRFVDRFE GRIVVPIKND SGHIVAFGGR ALGNEEPKYL NSPETRYFSK KKILFLFDEA
KKVAKEVGFF VITEGYFDAL AFRRDGIPTA VAVLGASLSR EAILKLSAYS KNVILCFDND
RAGFRATLKS LEDLLEYEFN VLVATPSPYK DPDELFQKEG EGSLKKMLKN SRSFEYFLVT
AGEVFFDKNS PAGVRSYLSF LKGWVQRMRK KGYLKHVENL VKEASASLQI PENQILNFFE
SEKSNTMLVH GSRSSKVYDE GRGLAYLFLN YEDLRGKILE LDLEVLEDEN AKEFFKRVSS
DEDLSEAIEN FPKELKDWVF ETIESIPPPK DPEKFLADLS EKLKIRRIER RIAEIDEMIK
KVSNDEERRL LLSMKLDLLR KIKRR
|
|---|
| |