| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1163 |
|---|
| Symbol | |
|---|
| ID | 6092598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | + |
|---|
| Start bp | 1201964 |
|---|
| End bp | 1203154 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642488358 |
|---|
| Product | diaminopimelate aminotransferase |
|---|
| Protein accession | YP_001739190 |
|---|
| Protein GI | 170288952 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00430339 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATCA CAAAAAGAAT AGAAGAACTC GGAGAAGAAA TGGTGGAGTC CCTGAAAAAA
TTCATCTCCA TCAATTCGGT GAATCCCGCC TTTGGAGGCC CAGGAGAGAA AGAAAAGGCC
GACTGGCTCG AAGGTCTCCT CAGGGATTTC GGTTTCGAGG TCGAACGCTA CGATGTGAAA
GACGATAGGG GCATATGGCG ATCGAACGTT GTAGCAAAGA TTCCAGGAAG AAACAGAGAA
AAAACGCTTT GGATCGTGAC TCACATCGAT ACCGTACCAC CGGGAGATCT CTCTTTGTGG
GAGACGGATC CTTTCGTGCC CGTTGTGAAA GACGGGAAGG TTTACGGTAG GGGAGCCGAA
GACAACGGAG GTTCCATGAT AGCCTCCATA TACGCTGGGA AGGTCCTCAT CGACCTTGGT
ATCACTCCTG AGTACAACTT CGGTCTTGCG CTCGTCGCCG ACGAGGAGGC AGGAAGCGGA
TATGGAATCC AATATCTGAT AGAAAAAGGG TTGTTCAGCC CAGAAGACAT GTTCCTGGTC
CCGGATGCCG GAAACGAAAA GGGAGACTTC ATCGAGATCG CAGAGAAGAG TATCCTGTGG
TTCAAAGTGA CGGTGAACGG AAAACAGGGA CACGCTTCAA GACCGAGGAC AACGGAGAAC
GCTCTCAGAA AAGGTGCGTA TCTCATAGCG GAGATAGATG AAGCGCTTCA CAGGAAATAC
TCCGATATAG ACGAACTCTT CGATGAACCG CTCAGCACGT TCGAACCCAC TCGAGCTGAA
AAAACTGTGG ACAACGTGAA CACCGTTCCC GGCAGGTTCG TTTTTTACTT TGACTGCAGG
GTTCTGCCCC GCTACGATCT CAACGAAGTG CTGTCCACCA TCGAGTCGAT TCTAGACGGA
AGAGGTGCAG AGCTGGAGGT CGTTGTGAAA CAGCCCGCAC CCAAGCCAAC TCCACCCGAT
TCGGAACTCG TGGTGAAACT TTCCGATGTT TTGAGAAGTC TAAGAGGGCT GGAAGCGAAA
GTGGGAGGTA TAGGTGGAGG CACCTGCGCC GCGTTCTTCA GAAAGAAAGG CTGGCCCGCT
GTCGTCTGGA GCACAATAGA CGGGACTGCT CATCAGCCCA ACGAGTACCG AAGAATATCG
CACATGGTGG AAGATGCGAA GGTGTTCGCA CTTCTCGGAA CTGAGAGGTG A
|
|---|
| Protein sequence | MEITKRIEEL GEEMVESLKK FISINSVNPA FGGPGEKEKA DWLEGLLRDF GFEVERYDVK
DDRGIWRSNV VAKIPGRNRE KTLWIVTHID TVPPGDLSLW ETDPFVPVVK DGKVYGRGAE
DNGGSMIASI YAGKVLIDLG ITPEYNFGLA LVADEEAGSG YGIQYLIEKG LFSPEDMFLV
PDAGNEKGDF IEIAEKSILW FKVTVNGKQG HASRPRTTEN ALRKGAYLIA EIDEALHRKY
SDIDELFDEP LSTFEPTRAE KTVDNVNTVP GRFVFYFDCR VLPRYDLNEV LSTIESILDG
RGAELEVVVK QPAPKPTPPD SELVVKLSDV LRSLRGLEAK VGGIGGGTCA AFFRKKGWPA
VVWSTIDGTA HQPNEYRRIS HMVEDAKVFA LLGTER
|
|---|
| |