| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1133 |
|---|
| Symbol | |
|---|
| ID | 6092566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 1174534 |
|---|
| End bp | 1175847 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642488327 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001739161 |
|---|
| Protein GI | 170288923 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACTCT CAATTCCCAT GATGCTTGCC ATGTTAGTTC AGACGATTTA CAACCTGGCC
GATGGTATCT GGGTCGCGGG ACTGGGGCCT TATGCGCTGG CAGCGATAGG ATTGTTCTTC
CCTATCTTCA TGGTGATCAT CTCCCTCGCC GCAGGTATAG GGGTTGGGGC GAGTTCGGTG
GTGTCCCAAA AGATTGGAGA AAGAGACAAG GAAGGAGCAG ATACCGCGGC TTCTGTTTCC
ATCCTGTTTT CAATCGTCAT TGGTTTTTTG AGCATTGCTG TTATTCTTCC CTTTATTTCT
GACATCCTCA TCTTCGCGGG AGCTCAGGGG GAAACTCTCA GACTGGCCCT CGAGTATTCG
GTGATCCTCG TGTATTTCAT TCCCCTTATC ATGTTCAACA ACGTAGCAAA CGGTGTTTTC
AGAGGTGAGG GAGACGCGAA AAGAGCGATG GTGGCCATAA CGATAGGTTC CCTTCTGAAC
ATAGGTCTGG ATCCCGTGTT CATCTACGTC TTCGGTATGG GGGTCAGAGG AGCAGCGTAC
GCCACCGTGG TATCAATCGC TGTTTCTTCC CTTCTGATCG CGTACTGGAT GTTTTTCAAG
AAGGACACGT ACGTATCCTT CCGTTTGAAA TGGGATGGAG AAATTCTGAA GAGAATATTG
AAGATCGGTA TCCCGGCTTC CCTGGCGCAG GCCTCGATGT CGGTGGCGAT CTACGTGCTC
AACGTCTTCG CGGTGAGAGC AGGAGGAGAC TATGGAGTTG CGGTTTTCAC AAGTGCGTGG
CGTGTCATAA ACTTTGGGAC TGTCCCGCTC ATCGGGATGG CCATGGCTGT GACATCCGTT
ACAGGCGCCG CTTTTGGTGA GAGAAACGGA GAAAAACTCG AAACGGCACA TCTCTACGCC
GTGAAACTCG GATTTTTCGT AGGGCTGGCA GTGATGTTCA CAATCTTGAT TTTTGCCCCA
TACATCGCAA GGCTGTTCAC TTATTCTCAG GAAGGTGAAA AATTATACAG CGATCTGGTG
AAAGCCCTCA GAATCCTGAG TCTTTTTCTT CCAGGTGTTC CATTTGGAAT GTTCACCTCC
TCCATGTTTC AGGGAGTGGG TCAGGGACTC AAAAGTCTGA TTGTCACCAT CATGAGAACT
GTGATTATGC AGGTTGTCTT TTCGTGGCTG TTCGTCTTCG TTCTGAGAAT AGGACTTGTG
GGAGTCTGGT GGGGCATAGT CCTTGGAAAC GCCACATCGG CTTTCATCAC TTTCAACTGG
GGAAGGTTCA CAGTGAAACA CCTCAAAAGA AATTTTCAGA AAAACATCGT ATAG
|
|---|
| Protein sequence | MKLSIPMMLA MLVQTIYNLA DGIWVAGLGP YALAAIGLFF PIFMVIISLA AGIGVGASSV
VSQKIGERDK EGADTAASVS ILFSIVIGFL SIAVILPFIS DILIFAGAQG ETLRLALEYS
VILVYFIPLI MFNNVANGVF RGEGDAKRAM VAITIGSLLN IGLDPVFIYV FGMGVRGAAY
ATVVSIAVSS LLIAYWMFFK KDTYVSFRLK WDGEILKRIL KIGIPASLAQ ASMSVAIYVL
NVFAVRAGGD YGVAVFTSAW RVINFGTVPL IGMAMAVTSV TGAAFGERNG EKLETAHLYA
VKLGFFVGLA VMFTILIFAP YIARLFTYSQ EGEKLYSDLV KALRILSLFL PGVPFGMFTS
SMFQGVGQGL KSLIVTIMRT VIMQVVFSWL FVFVLRIGLV GVWWGIVLGN ATSAFITFNW
GRFTVKHLKR NFQKNIV
|
|---|
| |