Gene TRQ2_1023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTRQ2_1023 
Symbol 
ID6092453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga sp. RQ2 
KingdomBacteria 
Replicon accessionNC_010483 
Strand+ 
Start bp1070046 
End bp1071005 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content40% 
IMG OID642488219 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001739056 
Protein GI170288818 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAGTG TTTATCTATT TTCAAGCGGA ACGTTAAAGA GAAAAGCGAA TACTATCTGT 
CTTGAATCAG AGGCGGGAAG AAAGTACATA CCTGTCGAAA ATGTGATGGA TATAAAGGTT 
TTTGGGGAGG TTGATCTCAA CAAAAGATTC CTTGAGTTTC TTTCTCAGAA AAGAATTCCT 
ATTCACTTCT TCAACAGAGA GGGGTATTAT GTAGGCACTT TTTATCCCAG AGAGTATTTA 
AACAGCGGTT TTCTGATACT GAAACAGGCA GAACACTACA TCAACCAAGA AAAGAGAATG 
CTCATAGCAA GAGAAATAGT TTCAAGATCG ATTCAAAACA TGATCGACTT TTTGAAAAAA 
CGAAAAGTCC AGGCTGATTC ACTAACGAGG TATAAAAAGA AAGCAGAAGA GGCGAGCAAT 
GTATCAGAGT TGATGGGAAT AGAAGGAAAC GCAAGAGAAG GGTACTACTC GATTATGGAC 
AATCTCGTGT CGGATGAAAG ATTCCGCATA GAGAAGAGAA CAAGAAGACC CCCTAAAAAC 
TTCGCCAATA CACTCATCAG TTTTGGAAAC TCGCTTCTTT ACACCACCGT TTTGAGTCTC 
ATCTATCAAA CACATCTGGA CCCGAGGATA GGATATCTCC ATGAGACGAA TTTCAGAAGG 
TTCTCACTCA ATCTTGATAT AGCAGAGCTG TTCAAACCAG CCGTGGTGGA TAGGTTGTTT 
TTGAATCTCG TCAACACTCG TCAAATAAAC GAAAGGCATT TCGATGAAAT CTCAGAGGGT 
CTCATGCTCA ACGATCAGGG AAAAAGTCTG TTTATCAAAA ATTACGAACA AATTTTGAGG 
GAAACGGTTT TTCACAAAAA GTTGAATCGG TACGTTTCCA TGAGATCTCT GATAAAGATG 
GAACTTCATA AACTGGAGAA GCACCTCATA GGTGAACAGG TTTTCGGATC TGAGGAATGA
 
Protein sequence
MESVYLFSSG TLKRKANTIC LESEAGRKYI PVENVMDIKV FGEVDLNKRF LEFLSQKRIP 
IHFFNREGYY VGTFYPREYL NSGFLILKQA EHYINQEKRM LIAREIVSRS IQNMIDFLKK 
RKVQADSLTR YKKKAEEASN VSELMGIEGN AREGYYSIMD NLVSDERFRI EKRTRRPPKN 
FANTLISFGN SLLYTTVLSL IYQTHLDPRI GYLHETNFRR FSLNLDIAEL FKPAVVDRLF 
LNLVNTRQIN ERHFDEISEG LMLNDQGKSL FIKNYEQILR ETVFHKKLNR YVSMRSLIKM 
ELHKLEKHLI GEQVFGSEE