| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1021 |
|---|
| Symbol | |
|---|
| ID | 6092451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | + |
|---|
| Start bp | 1067395 |
|---|
| End bp | 1069560 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 642488217 |
|---|
| Product | CRISPR-associated HD domain-containing protein |
|---|
| Protein accession | YP_001739054 |
|---|
| Protein GI | 170288816 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATGTAG TGAAGTCTCA TCCTGACAGA AGACTGATCG ACCATCTCGA AGGTGTTAAA
AAACGCTCTA TGGAGAAATT CAGATCACTT GATCTTTCCT GGGAAGAACT TTTCGGATAC
GATGAAAGAA TTCTGGAAGA ATTCGTTTCT CTACTCTCTG AATCGCACGA TATTGGAAAG
AGTACAACCT ACTTTCAAAA GCATCTGAAC GGTGAGAGAG TTGAAAGATC TTTGAGTGCG
CACGCTTTCT CCTCTGCGGT TGCTTTCTTC CACAGATCAA AAAACTTGCC GGACAAACTC
AGAATATTCG GTTTTGAGAT AATAAGAAGA CACCACGGAG ATTTCAGGAA CTTTCTGGAT
ATAGAAATCG ACGAAAAAGT TCTGGAAAAA CATTTCTCAG CCATTCCAGA AGATTTCCTG
AGAAGATATG ACCTTCATGA TTTGAAACTG TCAGAAACGA TGAAAGAGAT GAAAAAATTG
ATCAGTAAGT TTTCTATCCT TGGAAAAAAA GAGCTTTCTG ATTACTTTTT GATCCATCTT
TTTATGTCCG TACTTGTTTC TTCGGATAGG GAGGATGTGG TTTTCAAAGA CGAGCCGCTT
CCTTCTCTTC CTTCTTATGA AAAGGAGAAG ATACTCTCCT ACAGAGAGAA TCTCGGCAGA
AAGAATCAGA TCGACTCTCT GAGATGGAGA TTTCAGGACG AGATCTTGAA CTTCAAACCC
GAAAGAGGAA GGATATACTC CATAACTGCA CCGACGGGAA TAGGAAAAAC TCTTGCAAAT
CTCCTTTTTG CTGGACATCT CGCTGATGAA GACACGATCA TAATATACGC ACTTCCCTTC
ATAAACATAA TTGAGCAGAC CGTCGATAAG ATAAAGGAAA TATTTGAGAC AGAGGATCCG
TTCTTTGTCC TTCCTTTTCA TCACCTCGCA AATCCAGTTT ACGAAGAAGC TGACAAATAT
GAAGATCTTC TAATGAATCT CTGGCACTCC AGGGTGATAG TCACAACATT CGTGTCGCTT
CTGGAGTCCC TCATCACTTT CAGAAAGATT CCGTTCTTCT ACAAATTTCC TAAAGCCGTC
CTCATACTCG ATGAGGTTCA GGCAATACCT CACGAATACT GGACCCCTGT TGAAAAAACC
GTTGAATTTC TTTCGAAAAT GGGCACCACC GTTTTACTCT CTACAGCGAC AAAGCCCGCT
CTTTTGAAAG AAGCTCAGGA GGTGGTGTCT AACAAGAATG TTTATTTCAC AGCCTTGAAC
AGAACTGTTC TGAAAGTGGA AAAAGAGATG AGCTTTGAAG AATACAAAGA ATTCGTAATA
GAGACCTTGA AAGATGGTAA AAGAACGCTC ATCATAACAA ATACGATAAG AGAAGCCGAG
GAGATATACG ACGCTGTTGA AAGCATGGGA AAAACGTGTT TTCTTTCCTC CAGGGTGATA
CCAAAGCACA GACTGGAGAT TGTTTCGAAG ATAAATGAGT ACGATCTGTG CGTCTCCACT
CAGGTGGTGG AAGCAGGTGT TGATATCTCG TTTGAAAGGG TGATAAGAGA CATCGCACCT
GTTGACAGTA TCGTTCAGGC AGCGGGAAGG TGCAACAGAC ACTTCGAGTT GGAAAAGGGA
GAAGTGATAG TTGTACCTGT CAAGGATGAG AGAAAAAACA CCCTCTTTTC TTCTTACGTT
TACGGAAGTT TCCTCACAGA GACTTCCATG AACGTATTGA AGAACTACAA AGTTCTGGAA
GAAAGTGAAT TTTTCACGCT CGTGGAGGAT TTCTTCGACT ATGTGAAAAT GTACGGCAAT
CCGGATAAGA AAGGAATCGG CAAAGCGCTC GAGAATTTGA ATTTCAAAAA AATAGGAGAA
TTCAGTCTTA TTGAACCAGA ACCAACGGTA CCGTTCATCG TTCTTATTGA TGAAGAGGCT
CAAAGAGTAT TCGAAGAATT TGCAGAGATC TTCGATGGGA AAAAGTCAAG AGAAAACTTC
TCTCTCGTGA AGAGGTTGTT CAGAGAACTT TCTCCCTACA TCGTGAGCGC GAGGATAAAG
AAGGATCTTT CATTCCCACA CACGATCGCC GGCATGGTGG TTATCTACAG AAACGTTCTC
GACAAGTGGT ACCATCCTGT GAAGGGTTTG AGAGTGGAAG GATCCGATGA GGTGATCATC
ATATGA
|
|---|
| Protein sequence | MDVVKSHPDR RLIDHLEGVK KRSMEKFRSL DLSWEELFGY DERILEEFVS LLSESHDIGK
STTYFQKHLN GERVERSLSA HAFSSAVAFF HRSKNLPDKL RIFGFEIIRR HHGDFRNFLD
IEIDEKVLEK HFSAIPEDFL RRYDLHDLKL SETMKEMKKL ISKFSILGKK ELSDYFLIHL
FMSVLVSSDR EDVVFKDEPL PSLPSYEKEK ILSYRENLGR KNQIDSLRWR FQDEILNFKP
ERGRIYSITA PTGIGKTLAN LLFAGHLADE DTIIIYALPF INIIEQTVDK IKEIFETEDP
FFVLPFHHLA NPVYEEADKY EDLLMNLWHS RVIVTTFVSL LESLITFRKI PFFYKFPKAV
LILDEVQAIP HEYWTPVEKT VEFLSKMGTT VLLSTATKPA LLKEAQEVVS NKNVYFTALN
RTVLKVEKEM SFEEYKEFVI ETLKDGKRTL IITNTIREAE EIYDAVESMG KTCFLSSRVI
PKHRLEIVSK INEYDLCVST QVVEAGVDIS FERVIRDIAP VDSIVQAAGR CNRHFELEKG
EVIVVPVKDE RKNTLFSSYV YGSFLTETSM NVLKNYKVLE ESEFFTLVED FFDYVKMYGN
PDKKGIGKAL ENLNFKKIGE FSLIEPEPTV PFIVLIDEEA QRVFEEFAEI FDGKKSRENF
SLVKRLFREL SPYIVSARIK KDLSFPHTIA GMVVIYRNVL DKWYHPVKGL RVEGSDEVII
I
|
|---|
| |