| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1011 |
|---|
| Symbol | |
|---|
| ID | 6092441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | + |
|---|
| Start bp | 1056470 |
|---|
| End bp | 1057213 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642488207 |
|---|
| Product | CRISPR-associated RAMP Csm3 family protein |
|---|
| Protein accession | YP_001739044 |
|---|
| Protein GI | 170288806 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR02582] CRISPR-associated RAMP protein, Csm3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAGGC CGATACTCGG AAAGTACATC ATAAAGGGAA AGATCATTCT GGAAACAGGT
CTTAAGATCG GAGGTCAGGA GCTCGGTGTG AACATCGGTG GTATAGACAA TCCCGTTATC
AGAAATCCTC TCACGGGAGA ACCCTACATC CCCGGAAGCT CTGTGAAAGG AAAGATGAGA
AGCCTGATGG AAAGGTTGTT GAATCTGGAT ATATCTGGGA ACAAGGTAAG AAGACACGAA
TGCGAAGAAA GGGAATGCAA AGTCTGCAGG GTGTTTGGTT CGACCTCGAA AGAAGGAAAT
AACATCCCTT CACGCCTTCT TGTCAGAGAT GCGTTCCTCA CGGAAGATTC GAAAACGAAA
CTCCTCAGCA TGGAAACCGA CCTTCCATAC ACGGAATGGA AAACAGAGAA CGCACTGGAC
AGAGTCACCT GTAAAGCCGA TCCGAGAAGC TTTGAAAGAA TTCCCGCAGG TGCGGAATTT
GAATTCGAGA TCATCTACAC AGCAGAGAAC GAAAAGCACA TAAAGGAAGA CCTCGAAAAT
ATAGCCACAG CTCTGGAGCT TCTCGAAGAC GACTATCTCG GTGGAAACGG AAGCAGAGGA
TACGGAAAAG TGAAGTTCAG TATAGAAAAA GTGATCTTCA AGAGCGCCGA TTACTACAAA
GGAGAGGGAA CACCCGTAGA AAAAGAGGTC AAAGGTGGTG TTGAGGGCTT TAAGAAAGCC
ATCCCCGAAA TCGTGAAAGG GTGA
|
|---|
| Protein sequence | MERPILGKYI IKGKIILETG LKIGGQELGV NIGGIDNPVI RNPLTGEPYI PGSSVKGKMR
SLMERLLNLD ISGNKVRRHE CEERECKVCR VFGSTSKEGN NIPSRLLVRD AFLTEDSKTK
LLSMETDLPY TEWKTENALD RVTCKADPRS FERIPAGAEF EFEIIYTAEN EKHIKEDLEN
IATALELLED DYLGGNGSRG YGKVKFSIEK VIFKSADYYK GEGTPVEKEV KGGVEGFKKA
IPEIVKG
|
|---|
| |