| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_0859 |
|---|
| Symbol | |
|---|
| ID | 6092289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | + |
|---|
| Start bp | 883045 |
|---|
| End bp | 886893 |
|---|
| Gene Length | 3849 bp |
|---|
| Protein Length | 1282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642488057 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001738894 |
|---|
| Protein GI | 170288656 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0159294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGAGAA TACTTCTTAT TCTTGTCATG TTGATGTTCA GTGTGTTGTT CTCTGCAGAG
CTCGTAGGGG TACTTCCTAA GATAGAGAAT GATCGAGTGA TCATAAAGAT TCAGGTTTCT
TCACCGGTTG AAGATGTTTC GGCAGAAATG AATTCTTCAA AGACTGTGTT CTCCATTTTC
ATGAAAGGGG TTCAAATGAA GATCAGCAGA TTCATGGTTC CCGTTGGTGT TGGTCCTGTT
GAAGGTGTAC GAGTGGTGAA CGTTGGCAAT GGAGTTATGG TGTCCGCGAG TCTGCTGGTT
CCATTCCCAG GAAGCTACCG TTTAGAAGAC AAGACGATAG TGATGGAATT TCCAAGAAGT
AAGGAAAGAA TCGATGTGTC CTTTGAAAAC ATGCCTTTTG AAGATATGGT AAAGTACCTC
TCTGAGAGAT TGAATCTCAA CGTAATCGTT TCAGATAGTG TCAAAAGTGC AACAACGAGT
TTGAAACTGA ACGATGTCAC ACCCGAAGAT GCGCTGAGAG ACCTTCTCGT TACATTCGGA
GAAGTTGCCT ACGCTTATTT TCCGGATGGG ACTATGTTCA TAGGAAAATA CGAAGAAGTA
TCCGGAAGGT TTCAGAGATT CTGGGGTATA TACAGAGTAG AGAATCAAAC AGTTGCCGAC
AGGATAAAGA GTCTCATTTC TCAGGAAGCC ATGATAGACT ACCTTCCGTC AAAATCTGTT
CTCTTCGTCT ATGGAACTTC GGAAGAACAT GACCTCGTGG CGAGCCTTCT TTCTGTTTCT
CCACCCCTTC GGCAAAAAGA AGTTTCCTTC TCGGTAGATT CAGCGAGAGT GGAAGAACTC
CTGACCGCTC TCAAAAGTGT GTATCAGTTC GAGTATCATC TCTTAAAGCC GGTATCCAGA
GTGATTCTTG TGGGAGATTC TGAGACGATT TCGAAAGTGG AAAGATATAT CAGGATTTTG
GAAACTCGTG AGCAGGTGTC TGTAGAAGAA CAGGTCCAGA TTCCGGCTAA AAAATTCGTT
TTTTATGCCT ACGACCCAGA ATCCGCTGCT TCGCTTATCA CTTTGCTCCT CGGAATAGAT
GCCCAGCCTT TCAAGGACAT GAATCTGGTG GTGTGCCAGG TGCCGATAGA CAAGGAGCAG
GAACTGGTTG ATTTCATTGC AGAAAACAAC CTGGAACTCG GTGAGATGTT CTATCTGGAT
ATCAAAAAAG GTGAAGAGGA CTTTCTCAGA GAAGTGGCAC AATTTCTTGG AGTACCGGAT
TCAAGGCTGA GATTTCTCAA CATTGATGGT GAGAATGTAA AGGCAGGACT GTCAGTTTCA
AAAGCAGTCT ATGAGAAAGT ATCCCCCATT CTGGAAAAAT TGTTGTCACT CAGAAGAAAG
AACTTCATCG TGAAAAGTGT GGAATTGAAA AAGGAGATTC AGCAGGAAAT GATAGACGCG
ATAACGAGAA TGTACGGGGT TTCTATGGAA AAAATAGGGA ACTTCCTCTT CATAGAGGGA
GCCAGGAGTT CCGTTGAAAA CGCTGAAGAG CAGCTGAAGA AACTTCAGAT TGAACACACA
CAATTTCTGA AAATCGCCTT AAAAACTGAG AATGTGGAAG ATTTGAGCAG ATTCATGAAG
GAAAAGTACG GTGTTGAATT CGAGTACTTT TCTTCTCTGA AGATGGCAAT GCTGAGTGGG
AAGGAAGAAG AAAACGTTCA AAAGGCCGCT GAGGAATTGC AGATAATTTC TTCGGAGGAG
AGGATCATAA GGTTCGTGAA AAAAACTGAG AATGTACCGA TCGATAAAGC GAAAAATGTT
GTTTCGCAAC TGTACAGTGT ATCAATAGAA GAGTTAGGGA ATGAACTTGC CGTCATCGGT
GAAAGAGAAG AGGTCGAAAA GGCTGCTGAT CTTCTTCAGA AAATCTTCTC TTCCGAAGTA
GAGATCTCGC GTGACTTTGT GAAGTTGCCC AGCTGGATTG ATGAACAAGA GAAACTCCTC
GAAGTTGTGA AAAACAGCGC CGGGATCACT TACGAAATAC TGGACGGAGT AGTTTACTTT
GAAGGGACAA AGGAGAATGT CGAAAAGGCA AAGGAACTCT TCTCAGACAT AGTGGAAAAA
CTTGGAGAAG TACGTAAGGA AGAAACAGTG GAATTCCTCG AAGTGGATTC TTCCTTCCCT
GTTGAAGAAT TTATAAACCT CTCCAGCAAG CTGTATCCGG ATGTTACCTG TTTCAATCTT
GATCAACTGG GCCTTCTGGT TCTCAAGGGA TCTTCAGAAG CGGTGGAAGA TCTTTCGAGC
ATTTACCGTT CTTTCTTCGA GAGGCACCAA AAGATAGTCA AAGAAAACGT GTTCGATCGA
CTCATGCTGG AAGTTCCGAG CGGTTTTTCT TTCGAGGAAT TCAAGACCTT CCTGGAAGTT
CTCGTTCCAG AAGTCAAACA AGTTGTCTAT CTTGACAAGT TGAACCTGCT TCTGGTGGAA
GTTCCTGTTT CACAATCGGA GAAAGTGAAA AGTCTCCTCG ATACGTTCTT GAAAAAGGAA
GAAGCTGTAT CAGAAAAGAA AGCGGTGAAA AGTGTCACCA TACCTTCCGG TGTGAACCCT
GACGAACTTT CTTCTTACTT GAAGAAACTC CTCAGAAATG TCGAGATCAC GGTCTTTCCG
AACATGGGGC AGATGATCGT AGAGGGACCA GAGAACGAAG TGAGAAAAGC TGTAGAACTC
GTAGAAACGG AAAAAGAAAA GATCGTTTTG AAGGAAAAGA AAGATTACGT AAAGGTTTCT
GATGGTAAGC TGACTATAAA CGCAGAGGAT GCTCCGCTTT ACGATCTTCT CGAAGAGATC
GCCGGTGAAC TTGGAATTTC GGTGATGTTT GTCTCCATCC CTTCGGAGAA GATCACGATG
AAGGCAGATA ATGTCGCATG GGAAAAGTTT ATTGATCTGA TCTCTCAGAA CTATGGTTAT
TTATTTGACA ACAAAAACGG TGTGTACGTT GTCTCAAAAC CCAAACAGGA TCTTGCAAGG
CGCTACATCT ACGATGTGCC GCACAATTTC GATCAAATAA AAGCTTTGAT CGAATTCTAC
GGAGGAACGG TCTATGTGGA TTCCCTGAAC AACTTCATGG TGGTAACAGG GATTTCTGAG
ACGATAAAAA AAGAGCTGGA TGACATCATA GAAAAATTGA AAAAACCGAC GAAACAGGTA
GAGATATCTG CAAAGATAGT GGATAGATCT TTGATCGACA GATTGAGCAA AGAAACTGTT
CTCGAATTGA CTGGAGGAAA TGTGAATGTA GGGTCCTCTG GTGCAGGGAT ATCTTTCTTC
GTGACCGACT ACCTTGATTT CGAAAAGATC CTCGGAGAAA TTTTGAACAG CACTCTTTCT
CTTCAGTTCT CAGATCAAAA GACCAACACT CTCGATGACA TTCTTGCGAG CCCCAGAATC
GTCACCACCA GCGGAAAAGA GGCGAGAATA TTGATAGGTG ACAGAATACC GTACGTTACA
GATACCAACG GAGACGGAAC TCCAGAAGTG CAATTCCTCG AGACCGGTAT AGAACTCAGT
ATCACACCGT TCGTACGAAG CGACGACACC ATAGAGCTCG ATCTCTTTGT GAAGGCCAGT
GAGCCTGGAA ACTACATAAA TGAAGTGCCG GGGGAAAGGA CGCGAGAAGC CCAAACGCAC
CTCATCGTGA AGAACGGAAG TACCATAACG ATAGGAGGTC TGATCAGAGA AGTAACGAAC
GTAACAGAAA GTAAGCTACC TTTCCTCGGT GATCTACCGG TGATAGGTCA GTTCTTCAGA
ACAAAGTCCG AAAACAAAGA AAAGCGAGAT CTTGTCATAT TCCTCACCGT GAGGGTGGTG
GAACCATGA
|
|---|
| Protein sequence | MRRILLILVM LMFSVLFSAE LVGVLPKIEN DRVIIKIQVS SPVEDVSAEM NSSKTVFSIF
MKGVQMKISR FMVPVGVGPV EGVRVVNVGN GVMVSASLLV PFPGSYRLED KTIVMEFPRS
KERIDVSFEN MPFEDMVKYL SERLNLNVIV SDSVKSATTS LKLNDVTPED ALRDLLVTFG
EVAYAYFPDG TMFIGKYEEV SGRFQRFWGI YRVENQTVAD RIKSLISQEA MIDYLPSKSV
LFVYGTSEEH DLVASLLSVS PPLRQKEVSF SVDSARVEEL LTALKSVYQF EYHLLKPVSR
VILVGDSETI SKVERYIRIL ETREQVSVEE QVQIPAKKFV FYAYDPESAA SLITLLLGID
AQPFKDMNLV VCQVPIDKEQ ELVDFIAENN LELGEMFYLD IKKGEEDFLR EVAQFLGVPD
SRLRFLNIDG ENVKAGLSVS KAVYEKVSPI LEKLLSLRRK NFIVKSVELK KEIQQEMIDA
ITRMYGVSME KIGNFLFIEG ARSSVENAEE QLKKLQIEHT QFLKIALKTE NVEDLSRFMK
EKYGVEFEYF SSLKMAMLSG KEEENVQKAA EELQIISSEE RIIRFVKKTE NVPIDKAKNV
VSQLYSVSIE ELGNELAVIG EREEVEKAAD LLQKIFSSEV EISRDFVKLP SWIDEQEKLL
EVVKNSAGIT YEILDGVVYF EGTKENVEKA KELFSDIVEK LGEVRKEETV EFLEVDSSFP
VEEFINLSSK LYPDVTCFNL DQLGLLVLKG SSEAVEDLSS IYRSFFERHQ KIVKENVFDR
LMLEVPSGFS FEEFKTFLEV LVPEVKQVVY LDKLNLLLVE VPVSQSEKVK SLLDTFLKKE
EAVSEKKAVK SVTIPSGVNP DELSSYLKKL LRNVEITVFP NMGQMIVEGP ENEVRKAVEL
VETEKEKIVL KEKKDYVKVS DGKLTINAED APLYDLLEEI AGELGISVMF VSIPSEKITM
KADNVAWEKF IDLISQNYGY LFDNKNGVYV VSKPKQDLAR RYIYDVPHNF DQIKALIEFY
GGTVYVDSLN NFMVVTGISE TIKKELDDII EKLKKPTKQV EISAKIVDRS LIDRLSKETV
LELTGGNVNV GSSGAGISFF VTDYLDFEKI LGEILNSTLS LQFSDQKTNT LDDILASPRI
VTTSGKEARI LIGDRIPYVT DTNGDGTPEV QFLETGIELS ITPFVRSDDT IELDLFVKAS
EPGNYINEVP GERTREAQTH LIVKNGSTIT IGGLIREVTN VTESKLPFLG DLPVIGQFFR
TKSENKEKRD LVIFLTVRVV EP
|
|---|
| |