| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_0589 |
|---|
| Symbol | |
|---|
| ID | 6092005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 595518 |
|---|
| End bp | 596279 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642487774 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001738625 |
|---|
| Protein GI | 170288387 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCT GCATCATAGG GTATCCGGTG AGTCACAGCA TATCACCAAG GCTTTACAAC
GAGTATTTCA AAAGGGCGGG AATGAACCAC TCGTACGGTA TGGAAGAGAT ACCACCTGAA
TCTTTCGACA CGGAGATAAG AAGGATTCTC GAAGAATACG ATGGTTTCAA CGCGACAATT
CCTCACAAAG AAAGAGTGAT GCGGTACGTC GAACCATCTG AAGATGCGCA GAGAATAAAA
GCCGTGAACT GCGTCTTTCG GGGAAAGGGA TACAACACCG ACTGGGTTGG CGTTGTGAAA
TCGCTCGAGG GTGTAGAGGT GAAAGAACCC GTTGTCGTTG TGGGAGCGGG CGGAGCCGCA
CGTGCTGTGA TCTACGCTCT CCTCCAGATG GGCGTGAAAG ACATCTGGGT GGTGAACAGA
ACGATCGAAA GGGCGAAGGC TCTCGATTTT CCTGTGAAAA TTTTCTCTCT CGATCAGCTC
GACGAGGTTG TGAAAAAGGC GAAGAGTCTC TTCAACACCA CTTCCGTTGG AATGAAGGGA
GAGAAACTGA CCGTTTCCGA AGCTTCTTTG AAAGGTCTGT ATCTTGTTTA CGACGTGGTG
TACTTTGAGA CTCCTCTCGT TTCTGATGCG AAGAGATTGG GAGTGGAACA CGTTGTAAAG
GGAAACCTCA TGTTTTACTA TCAGGCGATG GAGAATCTCA AAATATGGGG AATCTACGAT
GAAAGATCGT TCAAAGAAGT GTTCGAGGAG GTACTGAGAT GA
|
|---|
| Protein sequence | MKFCIIGYPV SHSISPRLYN EYFKRAGMNH SYGMEEIPPE SFDTEIRRIL EEYDGFNATI
PHKERVMRYV EPSEDAQRIK AVNCVFRGKG YNTDWVGVVK SLEGVEVKEP VVVVGAGGAA
RAVIYALLQM GVKDIWVVNR TIERAKALDF PVKIFSLDQL DEVVKKAKSL FNTTSVGMKG
EKLTVSEASL KGLYLVYDVV YFETPLVSDA KRLGVEHVVK GNLMFYYQAM ENLKIWGIYD
ERSFKEVFEE VLR
|
|---|
| |