| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_0477 |
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| Symbol | rpoB |
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| ID | 6091887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga sp. RQ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010483 |
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| Strand | - |
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| Start bp | 471385 |
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| End bp | 475176 |
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| Gene Length | 3792 bp |
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| Protein Length | 1263 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642487659 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001738516 |
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| Protein GI | 170288278 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGA TCTCTTGCGG TAGGAGGACA AGGGTTTCTT TCGGCAAGAG CCGAGAGCCC
CTACCAATTC CAGACCTTGT GGAGATTCAG AAGATTTCCT ACCGAAGATT CCTCGAAGAA
GGTTTGCTCG AAGTCCTCAA AAAATTTTCC CCCATTTATT CGCAGGCGAC TCGCTCAGAT
TTGAAAAAAT CGGACAGAGG ATTTGCCCTT GAATTTGTTT CAACCAGGAT AGGAGAACCT
GTTGTTGATC CCCTTGAATG TAAAGCAAAG GGTTTAACTT ACAGTGTTCC AATATACGCA
ACGGCTCGCC TTACCGACAT GAAAAGCGGT GAAATGAAGG AAGAAGAAGT GTTCCTTGGC
TACATTCCCT ACATGACAGA TCGTGGAACG TTCATAATAA ATGGAGCAGA AAGAGTTGTG
GTCAATCAGA TAGTAGTTTC TCCAGGGCTT TACTTCTCGT CTGAGTACAT CGACAGAGAA
GAGTACGGCG GATACTTTCT TCCATCTCGA GGCGCATGGC TTGAAGTTAT CCTCGATCCC
TACGATGGAG TTCTTTACGC GGGTCTTGAC GGAAAGAAGG TCAATCTTTT CCTCTTTCTG
AAAACGATCG GTTATGAAAA GGATGAGGAT ATCCTCTCTC TTTATCCCAC CTATCTGGAT
GCCGACGATG AAGACAGTCT CCTGCTCCAT GTGGGTTCCA TTCTGCTTGA AGACATCTAC
GATGGTGACA GGAAGATCGC CGAAAAATGG GATATCCTGA CCAAAGATCT CGCGGAAAGG
ATTTTGATGA TAGATGACAT AAATCAGATA AAAATAGTTC ATCCAATAGC TCAAAATACA
TTTGAAAAGA TGCTGGAATT GGTGTCTTCC TCGGGCGAAG AGGGAGAGGA AGAAGAGGAA
AAGACAAAGA TTTACGGTTT AAACGAAGTT ACCGTTGTGG ACGCTTATCT GGAGATATTT
AGAAGATTGC GACCCGAAGA ACTTCCAAGA ATAAACGCGG CAAAAAGGTA TCTGCACGAC
CTCTTCTTCA ATCCAGAAAG GTACGATCTT TCCGAGGTGG GAAGATACAA AGTCAACGAA
AGACTCAGAA ACGCTTACAT CAGGTACCTC ATAGAGGTTG AAGGGGAAGA TCCCGAAGAG
GCGAGGAAGA AGGTTTACAA CGAAACTTCT CTCGTTCTGA AACCACTTGA TATAGTCCTC
GCTTCCAGAA TTCTCTTCGA CTACTTTGAG AGAAGATACG TCAACGATTT TGAAATAGAT
TCCTACGAGT TGAAGAATCT GATCAGAATC TTCAAGGAAG AATACTTGGA AAAGAGAAAA
ACGGCTCCCT ACGATCTCAG AAAACTTGTA TCTGTGTTCC GGAGAAACTA CGGAGTAACA
TCTGATCTCG GTGTGTTTGC TGCTATCAGG TATGTTTCCA ACATAAACAA AGAGCTTCCT
TCGATACCTT TCGATACGAA GGATCACCTC GGGAACAAAC GTGTTAGAAC CGTTGGAGAA
CTCGTTCAGA GAGAGTTCGA GAGATTGTTC GCAAGGGCGC AGAAGGCCAT TCAGGAAAGA
CTCACACTCA TAAACTCTCT GAGTAAGGTT TCCATTCAGA GCCTTATAAA CATAAAATCC
ATCATATCAA CGGTCAACCA GTTCTTCGCG ATGAACCAGC TTTCTCAGTT CATGGATCAG
GTGAATCCTC TGTCAGAACT CACTCACAAA AGAAGGGTTT CTGCTGTTGG ACCCGGTGGA
TTGAGAAGAG AATCCAAAGT CTTCGAAGCA AGAAACGTGC ACTACTCTCA GTACGGAAGG
CTGTGTCCCA TTGAAACACC CGAAGGCGCG AACATAGGAT TCATAACATC TCTGGCTATA
TACGCTAAAA TCGATGAATA CGGATTTCTC ATGACTCCTT ATAGAAAGGT AGTCAATGGA
AAAGTAACGG ATGAAGTGGT CTATCTGAGG GCCAACGAGG AAGAAGAGTA CAAAATCATA
CCTGCCACCA CACCTGTAGA CGAAGAGGGT AACATAATAC CAGAGAGAGT AGTGGCTCGA
ATGGGTGAAG ATATCAGGCT TGTTCCCAAA GAAGAAGTAG ATTTCATGGA TGTATCGACG
AAGCAACCCT TCAGTGTCTC GGCTTCACTC ATTCCGTTCC TCGAACACGA CGACGCTAGC
CGAGCCCTCA TGGGTTCGAA CATGCAGAGG CAGGCCGTCC CACTTCTGAA AACAGAAGCA
CCCCTCGTTG GAACTGGAAT GGAATGGGAA GCAGCGAAAA ATTCTGGTTA TGTTGTTCTC
GCAGAACACG ATGGAATAGT GAAAGAGGTC GACGCCGCCA GAGTTGTTGT TCACAGAACG
GACGAGAATG GAAATCTCAT GTACGACGAT AAAGGCAACC CAGTGGTTGA TGAATACAGA
CTTCTAAAGT TTGTGAGATC CAACCAGGAT ACGATGATAA ATCAAAAACC CATTGTCAAC
GAAGGCGATT TTGTGAAGAA GGGTGATCCC ATAGCCGACG GTCCGGCAAC CGACATGGGA
GAACTGGCAC TTGGAAGGAA CATCCTCGTT GCCTTCATGC CATGGGAAGG TTACAACTAC
GAGGACGCCA TCCTTGTGAG TCAGGAGCTT CTCGAAGAAG ACGTCTTCAC ATCGATCCAC
ATAGAAGTTT ATGAAACCCA GGCAAGGGAA ACGAGGCTCG GTCCTGAAGA AATCACCGCT
GATATACCGA ACGTGAGCAA AGAACTTCTG AAAAATCTCG ATGAGAACGG AATCATCAGA
GTTGGAGCGT ACGTTGTGAG TGACTATGGA GTGGGTTCTC AGGCGATACT GGTTGGAAAG
GTGACGCCGA AAGGTGAAGG AGACACAACA CCCGAAGAAA AGATCATCAG ATCCGTTTTT
GGTGAACGCG GAAGAGACGT GAAGGATACA TCCCTCAGGT TGCCTCATGG GGTTGAGGGA
AGAGTTATAA GGGTTGATGT TTACGATCAA AACGATATAG CAGAACTGGG AGCAGGAGTT
TTGAAGCTGG TCAGGGTGTA CGTTGCTTCG AGAAAGACGC TCGACATCGG AGACAAGCTC
GCAGGACGTC ACGGAAACAA AGGAGTCGTT TCAAACATAC TTCCAAAAGA AGACATGCCG
TTCCTACCTG ATGGAACACC GGTTCAGATG GTGCTGAACC CGCTGGGAAT ACCTTCACGT
ATGAACGTCG GTCAGATTCT GGAAACGCAC CTTGGATGGC TCGCCAAACT GACCGGAAAA
TGGTTCGCAA CTCCTGTGTT CGAAGGGGCA AAGGAAGACG AGATTCTCAG ACCGCTTTAC
GAAGAAAGGA AGAAGAGGGG CCTTCACCTT GGAGACGACG AAAACAATCC GAATGGAAAA
GTGGTTCTCA GAGATGGAAG AACGGGAGAA CCCTTCGACA ATCCTGTGGT GGTTGGTTAC
ATGTACATGC TGAAACTCAT CCATATAGCC AAAGAAAAGA TTCACGCAAG GTCCACAGGG
CCGTACTCTC TCATTCACCA GCAGCCTCTC GGTGGAAAGT CTCACTTCGG TGGACAGAGG
CTTGGAGAAA TGGAGGTCTG GGCTCTGGAG GCCTATGGAG CTGCTCATAC TCTTGCGGAG
ATGCTCACCA TAAAATCCGA CGACATAAAA GGAAGAAACG AAGCCTACAA AGCCATACTG
AAAAACATGA ATATACCTGA ACCTGGTGTT CCCGAAAGCT TTAGGGTTCT CATCAAAGAA
CTCAGAGGTC TCGCGCTCGA TGTGAGACTC TACGATGAGA ACGGTAACGA AATAGATATC
GACAAGTACT GA
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| Protein sequence | MKEISCGRRT RVSFGKSREP LPIPDLVEIQ KISYRRFLEE GLLEVLKKFS PIYSQATRSD
LKKSDRGFAL EFVSTRIGEP VVDPLECKAK GLTYSVPIYA TARLTDMKSG EMKEEEVFLG
YIPYMTDRGT FIINGAERVV VNQIVVSPGL YFSSEYIDRE EYGGYFLPSR GAWLEVILDP
YDGVLYAGLD GKKVNLFLFL KTIGYEKDED ILSLYPTYLD ADDEDSLLLH VGSILLEDIY
DGDRKIAEKW DILTKDLAER ILMIDDINQI KIVHPIAQNT FEKMLELVSS SGEEGEEEEE
KTKIYGLNEV TVVDAYLEIF RRLRPEELPR INAAKRYLHD LFFNPERYDL SEVGRYKVNE
RLRNAYIRYL IEVEGEDPEE ARKKVYNETS LVLKPLDIVL ASRILFDYFE RRYVNDFEID
SYELKNLIRI FKEEYLEKRK TAPYDLRKLV SVFRRNYGVT SDLGVFAAIR YVSNINKELP
SIPFDTKDHL GNKRVRTVGE LVQREFERLF ARAQKAIQER LTLINSLSKV SIQSLINIKS
IISTVNQFFA MNQLSQFMDQ VNPLSELTHK RRVSAVGPGG LRRESKVFEA RNVHYSQYGR
LCPIETPEGA NIGFITSLAI YAKIDEYGFL MTPYRKVVNG KVTDEVVYLR ANEEEEYKII
PATTPVDEEG NIIPERVVAR MGEDIRLVPK EEVDFMDVST KQPFSVSASL IPFLEHDDAS
RALMGSNMQR QAVPLLKTEA PLVGTGMEWE AAKNSGYVVL AEHDGIVKEV DAARVVVHRT
DENGNLMYDD KGNPVVDEYR LLKFVRSNQD TMINQKPIVN EGDFVKKGDP IADGPATDMG
ELALGRNILV AFMPWEGYNY EDAILVSQEL LEEDVFTSIH IEVYETQARE TRLGPEEITA
DIPNVSKELL KNLDENGIIR VGAYVVSDYG VGSQAILVGK VTPKGEGDTT PEEKIIRSVF
GERGRDVKDT SLRLPHGVEG RVIRVDVYDQ NDIAELGAGV LKLVRVYVAS RKTLDIGDKL
AGRHGNKGVV SNILPKEDMP FLPDGTPVQM VLNPLGIPSR MNVGQILETH LGWLAKLTGK
WFATPVFEGA KEDEILRPLY EERKKRGLHL GDDENNPNGK VVLRDGRTGE PFDNPVVVGY
MYMLKLIHIA KEKIHARSTG PYSLIHQQPL GGKSHFGGQR LGEMEVWALE AYGAAHTLAE
MLTIKSDDIK GRNEAYKAIL KNMNIPEPGV PESFRVLIKE LRGLALDVRL YDENGNEIDI
DKY
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