| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_0476 |
|---|
| Symbol | |
|---|
| ID | 6091886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 466296 |
|---|
| End bp | 471368 |
|---|
| Gene Length | 5073 bp |
|---|
| Protein Length | 1690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642487658 |
|---|
| Product | DNA-directed RNA polymerase, beta' subunit |
|---|
| Protein accession | YP_001738515 |
|---|
| Protein GI | 170288277 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATGT CCTCTTTCAA GAGGAAGATA AAGGCAATTC AGATAAAGAT AGCCTCTCCA
GAAGTGATAA GAAGCTGGTC TGGAGGAGAG GTCAAGAAAC CAGAAACGAT CAACTACAGG
ACATTCAAGC CCGAGAGAGA CGGCCTTTTC TGTGAGAGGA TTTTTGGTCC TGTGAAGGAC
TACGAATGTG CCTGTGGTAA GTACAAGGGG AAGAAATACG AAGGTACCGT CTGTGAAAGG
TGTGGAGTCA GAGTCGAATC CAGAGAAGCC AGGAGAAAAA GGATGGGGCA CATAGAACTG
GCAGCACCCG CTGTGCACAT CTGGTATCTC GAGAGCATAC CGAGTGTTCT CGGAACACTC
TTGAACATGA GCACTTCAGA CCTGGAAAAC ATCATCTACT ACGGCAGTCG CCGTGTCATA
GAAAGGGTTT TCATTGTAAC TGATCCCAAA GATACTCCGT TCTCCCAGGG GGATGTGATC
TACGAGACCG AGTACAGGAT ATACAGAAAA AAGTGGGATT TCGATGTTGA ACAGGCGTTC
GTGGTGAAGA ATCCAAAATC TCCTGTTCTT TCCGATATCG ATGGAGAAGT GACTTTGAAG
ACAGAAAAGT CCATCACAGG AAGGGAAATC ACCTGGATCA TTGTGAAGAA CATTACCAGA
GCCACACACA CGGTGCTCCC TGGAATGATT CTCGTTGTGA AAGATGGCCA AGAAGTGGAA
AAAGGACAGG ATCTGACAAA AGAAATGACA ATCGACCCTG TTTACGCTCC GTTTGACGGT
CACGTGGAAA TAGATGAACT TTCGAATACT ATTACGTTGA AACCTCTCAC AACCAGTAAG
GATCAGCCGG TTGTTTTCAC GGTTCCTTAT GGAGCGAAGA TTCTTGTTTC GAACGGCCAG
AAAGTGAAAA AAGGTGATCA GATCACGACT TCTACCAGCC TCCCATCCGT CAAATCGAGC
ATATCTGGTA CAGTGAGATT TGGTTCCAAC CTCAACATAA GAGCGCTTGA AGACGGAAAC
TTCGAAGTGC TCTCCACCGG TGAAGTCTAT GTAGAACAGG TTATAGAGGA GAGAAAATAT
CCTGTCTTTG AAGGAGCGCT TGTCTACGTT AACAACGGCG ACCAGGTGAA GAAAGGGGAT
CACTTAGCTG ACAGATTCCT CTTCGAGGAA GAGTATCTCT CTGCCACCGA GTACAAAATC
TTCGAGTCCC ACTATCCAAC CATGTTCGAT GTTGAAGAGA GAACGGAAAA CGACAGACCG
ATCGTGGTCA TAACGGATAT AGATCCCGAG GTTTCCAAAG AGACAGGCTT GAAAGTTGGC
GATATAGTCA CAGAAAACGA GTACGAAGCG TATCTTCAGA TATATCCAGA AAAGATAGTG
GCTGATGCCG GAGCGCAGGC GATAAAGAAA CTGCTTCAGA ATCTGGATCT GGAAGCGCTT
CAGGCGGAAA TCGAAGCGGA ACTCAAAAAG TTACCTTCTT CCAGCTCGAA GGCGATAAAG
CTCAGAAGAA GGTTGAAGAT GGTGAAGGAT TTCCTTAAAT CTGGCAACAA ACCCGAATGG
ATGGTTCTTG AGGTCGTTCC CGTGATTCCA CCCGATCTCA GGCCGATGAT ACAGATTGAG
GGAGGAAGGT TCGCCACAAC AGATCTCAAC GAACTTTACA GAAGACTCAT AAACAGAAAC
AACAGACTCA AAAAACTCCT GGAACTCGGG GCACCTGAGA TCATTCTGAG AAACGAGAAA
AGAATGCTTC AGGAAGCGGT TGATGCTCTC ATTCACAACG GCTCTGATTC GGAGGGAAAG
AGAAGCAGAA GAGCCGTTTT GAAAGACAGA AACGGCAGGC CTCTGAAATC GCTCACCGAT
CTACTGAAAG GAAAGAAGGG AAGGTTCAGA AGGAACCTGC TTGGAAAGCG TGTGGATTAC
TCTGGAAGAG CGGTTATTGT CGTGGGCCCA AATCTGAAGA TACACCAGTG CGGTATTCCA
AAGAAAATGG CAATGGAGCT CTTCAAACCG TTTGTTCTGG CGAAACTCCT TGGAGAGGGT
TCTTCCAGCA AAACCATGAG AAAGGTCAAG AAAGCGATCA TAGAAAAAGA GATGCCGGAA
GCCTGGGAAG TGCTTGAAGA AGTGATAAAG GGAAGCGTCG TTCTTCTGAA CAGAGCTCCC
ACACTCCACA GGATGTCAAT TCAGGCGTTT GAACCAAAAC TCGTTGAAGG AAACGCCATA
CAGCTCCATC CTGTCGTGTG TCCACCATTC AACGCGGATT TTGACGGTGA CCAGATGGCG
GTTCATGTAC CGCTTTCGGC CGCGGCGCAG GCAGAGGCAA GATTTCTCAT GCTTTCGAGA
TACAACATCA TCTCCCCAGC ACACGGGAAG CCGATTTCGC TGCCGACGCA GGATATCATC
ATAGGTTCTT ACTACCTCAC AACAGTTGGT AAAGAATTCG ACTCACTGAA AGAAGAAGAT
GTGAAATGGA AGTTCTCTTC GCCCGAAGAG GCGATGCTGG CTTACCACCT TGGATTCATA
AAACTTCACA CTCCGATTCT GATAAAGGTC GTTATCAACG GCGAAGAAAA ACGAATAAAG
ACGACTCTGG GAAGAGTGAT CTTCAACGGC ATTCTCCCGG AAGATTTGAG GGATTACAAT
AGAATTTTCG ACAAAAAACA GATAAACGCT CTCGTCTATG AAACGTTCAA GAGACACGGT
ATAGACAGAG CTGCGGATCT CCTGGATGAC ATAAAAGACA TCGGTTTCCA CTACGCAACC
GTTTCCGGTC TGACTCTCTC GTTGAAAGAT CTGAAGATAC CACCAGAGAG AGATGAGATT
CTCAGGAAGA CCTGGGAGAA GGTCAGAATA ATCGAAGAGA ATTACGAAAA GGGCTTCCTG
ACGGAGGAAC AGAGAAAGAG TGAAATCATA CGACTCTGGA TGAGTGTGAC GGAGGAGATC
ACAAAACTCA CATCCAAAAC ACTCGCAGAG GATCCGTTCA ACCCCATATA CATGATGGTG
AACTCTGGTG CTAGAGGTAA CATAGATCAG GTGAAACAGC TCGCCGGTAT CAGAGGTTTG
ATGATCAAGG CGTACGACCC GCGATCCAGG GAAATAAAGT CCAAGATCTT CAAAGGTCAG
GCAATACACG AAGCACTCAC CTTCGATTAT CCAGTCGATA AGAACCTCAG AGAAGGTGTT
GACATCCTGC AGTTCTTCAT ATCCACCTAC GGTGCTAGAA AGGGACAGGT TGACACGGCA
ATGAACACAT CCTTTGCGGG ATATCTGACG AGGCGTCTTG TGGATGTAGC CCAGAGCGTC
ACAGTATCGG AACCCGACTG TGGAACACAT GAGGGAATCA GAGCCATGGA TCTGATAAAA
GAAGGAACAG TCGTGGAAAA GATGAACGAG TTCCTCTTCG GTAGAGTGCT CGCAAGGGAC
GTGCTTGATC CAGAAACAAA AGAAGTTTTA AAGAATCCAG AAACGGGCAA GGAATACACG
AGAAACACCA TGCTCACAGA CGACGATGCG AACTTCCTGG CTTCTTACAA GAAAATGGTT
GACGTTGTGA GGTACGAAGA GATAGACATA ACAGAACTCT CACTCCCCAA CATGTACGCC
GAGATAGCAG AACCCGTTGG AGAGTACGAA GAAGGAACGG AACTCACCTG GGATGTGGTA
AAAGCTGCTA AGAACGAAGG GAAATACCGC ATAAAGGTGA AGGTCTATCC TGTCGTTGGA
ACCGTTTACG CGGAAGAGGA ACCTTTGTAC GATAAAAAAG GTGAAAGACA GCTTCTCGTG
TACCAGGAAG TGATAAACGA GATCGTGGCG AAGATGCTCG AAGAGAATGG AATAGAAAAA
GTTCCCGTGA GACCCGATAT CATTGTGAGA TCACCTCTCA CCTGTGAGTC TGAGTACGGC
GTCTGCGCTG CCTGCTACGG TATGGATCTT TCCAACCACA AGATAGTGAA CGTCGGTGAG
GCTGTGGGAA TCGTGGCCGC TCAGTCCATA GGAGAGCCCG GCACACAGCT CACAATGAGA
ACATTCCACG TTGGAGGAGT CATGGGTGCG AGCGACATCG TCAGCGGTCT CACAACTGTG
GAGAAGACGT TCGAACCGTA CGCGTTCTTG AGAGAAGAAA AGAGCGGTGG AAAGAAAGAA
ATCAGAAAAT ACTATGGATC CGAAGCCATT CTGTGTGAGG TCGATGGTTT CGTTAAAGAC
ATAGCAACCG ATGAAAGTGG TAGAACGGTG ATTTACATCG AGGATTACGC CGGTAACATC
CACGCTTACA AAGTACCGAA GAGAGCGAAA GTAAGGGTAG AAAAAGGCCA GAAAGTCCTG
AGAGGAGAAA CCCTCACCAG CGGCGCCATT GTGTGGTGGA AACTCCTGGA GCTCGAATCA
GAAAAAGGTG TAATGACGGC GATGAATCTT TTGAAGATCA TAAAGAACGC CTACGTCCAG
CAGGGTGTGA GTATACACGA CAAGCACTTC GAGATCATAT TCAAACAGAT GCTAAGCATG
GCAACGATCG TCGATCCTGG AGACAGCGAT TATCTACCGG ACCAGCTTGT ACCACTTGTG
GATATAAAGA GATTCAACAG GGAAATCCTC GAAGGAAATG CGAAAGTGGA AGAGAACAGG
AAGTGGGTCA TAGGAAAGAC GCTCGCAAAG AGGATCATCG CGGAAACAGA AGAGGGAGAA
CTCGTGGAAC TCGCGCAAAA AGGCGATGAA GTGACCGAGG AACTTTTGAA GAAGATCATA
GAAGCGGGAA TAAAAGAGAT CGACGTCTTC GAAAAAGATA AAGTTGTGAC GTACCAGATT
CTCCCGAAGG AACCTATCAA GTACAAGAGA AGACTCCTGT CGCTCAAGAA AGCGGCTCTT
AACTACCCCG GCTGGCTCAG CGCGGCTGCG TTCGAAGAAA CTGCGTGGGT GTTGACCGCA
GCGGCGATCG AAGGAAAGGT CGATCCGCTC ATTGGATTGA AGGAAAACGT GATCGTTGGT
CAGCTGATAC CCGCAGGAAC CGGTCTCGAT GTCTTCGCGG GAATCCAGGT GGAAGAAACC
CCAAGGGCCG CGGTGGAAGA AGAACTCGCG TGA
|
|---|
| Protein sequence | MPMSSFKRKI KAIQIKIASP EVIRSWSGGE VKKPETINYR TFKPERDGLF CERIFGPVKD
YECACGKYKG KKYEGTVCER CGVRVESREA RRKRMGHIEL AAPAVHIWYL ESIPSVLGTL
LNMSTSDLEN IIYYGSRRVI ERVFIVTDPK DTPFSQGDVI YETEYRIYRK KWDFDVEQAF
VVKNPKSPVL SDIDGEVTLK TEKSITGREI TWIIVKNITR ATHTVLPGMI LVVKDGQEVE
KGQDLTKEMT IDPVYAPFDG HVEIDELSNT ITLKPLTTSK DQPVVFTVPY GAKILVSNGQ
KVKKGDQITT STSLPSVKSS ISGTVRFGSN LNIRALEDGN FEVLSTGEVY VEQVIEERKY
PVFEGALVYV NNGDQVKKGD HLADRFLFEE EYLSATEYKI FESHYPTMFD VEERTENDRP
IVVITDIDPE VSKETGLKVG DIVTENEYEA YLQIYPEKIV ADAGAQAIKK LLQNLDLEAL
QAEIEAELKK LPSSSSKAIK LRRRLKMVKD FLKSGNKPEW MVLEVVPVIP PDLRPMIQIE
GGRFATTDLN ELYRRLINRN NRLKKLLELG APEIILRNEK RMLQEAVDAL IHNGSDSEGK
RSRRAVLKDR NGRPLKSLTD LLKGKKGRFR RNLLGKRVDY SGRAVIVVGP NLKIHQCGIP
KKMAMELFKP FVLAKLLGEG SSSKTMRKVK KAIIEKEMPE AWEVLEEVIK GSVVLLNRAP
TLHRMSIQAF EPKLVEGNAI QLHPVVCPPF NADFDGDQMA VHVPLSAAAQ AEARFLMLSR
YNIISPAHGK PISLPTQDII IGSYYLTTVG KEFDSLKEED VKWKFSSPEE AMLAYHLGFI
KLHTPILIKV VINGEEKRIK TTLGRVIFNG ILPEDLRDYN RIFDKKQINA LVYETFKRHG
IDRAADLLDD IKDIGFHYAT VSGLTLSLKD LKIPPERDEI LRKTWEKVRI IEENYEKGFL
TEEQRKSEII RLWMSVTEEI TKLTSKTLAE DPFNPIYMMV NSGARGNIDQ VKQLAGIRGL
MIKAYDPRSR EIKSKIFKGQ AIHEALTFDY PVDKNLREGV DILQFFISTY GARKGQVDTA
MNTSFAGYLT RRLVDVAQSV TVSEPDCGTH EGIRAMDLIK EGTVVEKMNE FLFGRVLARD
VLDPETKEVL KNPETGKEYT RNTMLTDDDA NFLASYKKMV DVVRYEEIDI TELSLPNMYA
EIAEPVGEYE EGTELTWDVV KAAKNEGKYR IKVKVYPVVG TVYAEEEPLY DKKGERQLLV
YQEVINEIVA KMLEENGIEK VPVRPDIIVR SPLTCESEYG VCAACYGMDL SNHKIVNVGE
AVGIVAAQSI GEPGTQLTMR TFHVGGVMGA SDIVSGLTTV EKTFEPYAFL REEKSGGKKE
IRKYYGSEAI LCEVDGFVKD IATDESGRTV IYIEDYAGNI HAYKVPKRAK VRVEKGQKVL
RGETLTSGAI VWWKLLELES EKGVMTAMNL LKIIKNAYVQ QGVSIHDKHF EIIFKQMLSM
ATIVDPGDSD YLPDQLVPLV DIKRFNREIL EGNAKVEENR KWVIGKTLAK RIIAETEEGE
LVELAQKGDE VTEELLKKII EAGIKEIDVF EKDKVVTYQI LPKEPIKYKR RLLSLKKAAL
NYPGWLSAAA FEETAWVLTA AAIEGKVDPL IGLKENVIVG QLIPAGTGLD VFAGIQVEET
PRAAVEEELA
|
|---|
| |