Gene EcolC_4008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_4008 
Symbol 
ID6064561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp4402697 
End bp4403569 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content51% 
IMG OID641603419 
Product23S rRNA pseudouridine synthase F 
Protein accessionYP_001726934 
Protein GI170021980 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.098553 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCCCG ACTCATCAGT CCGTTTAAAT AAATACATCA GCGAAAGCGG AATTTGCTCA 
CGCCGCGAAG CGGATCGCTA TATCGAGCAA GGCAATGTGT TCCTTAATGG CAAGCGAGCC
ACCATTGGCG ATCAGGTGAA ACCCGGCGAC GTTGTGAAAG TAAACGGTCA GTTGATTGAG
CCTCGGGAAG CCGAAGATTT GGTACTTATC GCCCTGAACA AGCCCGTCGG TATTGTCAGC
ACCACCGAAG ATGGCGAGCG CGATAACATT GTCGATTTCG TTAACCACAG CAAACGCGTG
TTCCCGATTG GCCGCCTGGA TAAAGACTCC CAGGGGCTGA TTTTCCTCAC CAATCACGGC
GATCTGGTGA ATAAGATCCT CCGTGCGGGT AACGATCATG AGAAAGAGTA TCTGGTTACG
GTCGATAAAC CGATTACCGA TGAATTTATT CGTGGTATGG GGGCGGGGGT GCCAATCCTC
GGGACAGTGA CTAAAAAGTG TAAAGTCAAA AAAGAAGCGC CGTTTGTCTT CCGCATTACC
CTGGTGCAGG GGCTGAACCG TCAGATCCGT CGCATGTGCG AGCACTTTGG TTACGAAGTG
AAAAAGCTGG AACGTACGCG CATTATGAAC GTCAGTTTAA GCGGCATTCC GCTGGGTGAG
TGGCGCGATT TAACTGATGA TGAGTTAATC GACCTCTTTA AGCTCATCGA AAATTCCTCT
TCCGAGGCAA AACCTAAAGT GAAGGCCAAA CCGAAAACAG CGGGCATCAA ACGTCCAGTC
GTTAAGATGG AAAAAACGGC GGAAAAAGGC GGTCGCCCGG CGTCCAACGG TAAGCGTTTT
ACCTCGCCGG GGCGTAAAAA GAAGGGGCGC TGA
 
Protein sequence
MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE 
PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG
DLVNKILRAG NDHEKEYLVT VDKPITDEFI RGMGAGVPIL GTVTKKCKVK KEAPFVFRIT
LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS
SEAKPKVKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR