Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_4008 |
Symbol | |
ID | 6064561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 4402697 |
End bp | 4403569 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641603419 |
Product | 23S rRNA pseudouridine synthase F |
Protein accession | YP_001726934 |
Protein GI | 170021980 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.098553 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGCCCG ACTCATCAGT CCGTTTAAAT AAATACATCA GCGAAAGCGG AATTTGCTCA CGCCGCGAAG CGGATCGCTA TATCGAGCAA GGCAATGTGT TCCTTAATGG CAAGCGAGCC ACCATTGGCG ATCAGGTGAA ACCCGGCGAC GTTGTGAAAG TAAACGGTCA GTTGATTGAG CCTCGGGAAG CCGAAGATTT GGTACTTATC GCCCTGAACA AGCCCGTCGG TATTGTCAGC ACCACCGAAG ATGGCGAGCG CGATAACATT GTCGATTTCG TTAACCACAG CAAACGCGTG TTCCCGATTG GCCGCCTGGA TAAAGACTCC CAGGGGCTGA TTTTCCTCAC CAATCACGGC GATCTGGTGA ATAAGATCCT CCGTGCGGGT AACGATCATG AGAAAGAGTA TCTGGTTACG GTCGATAAAC CGATTACCGA TGAATTTATT CGTGGTATGG GGGCGGGGGT GCCAATCCTC GGGACAGTGA CTAAAAAGTG TAAAGTCAAA AAAGAAGCGC CGTTTGTCTT CCGCATTACC CTGGTGCAGG GGCTGAACCG TCAGATCCGT CGCATGTGCG AGCACTTTGG TTACGAAGTG AAAAAGCTGG AACGTACGCG CATTATGAAC GTCAGTTTAA GCGGCATTCC GCTGGGTGAG TGGCGCGATT TAACTGATGA TGAGTTAATC GACCTCTTTA AGCTCATCGA AAATTCCTCT TCCGAGGCAA AACCTAAAGT GAAGGCCAAA CCGAAAACAG CGGGCATCAA ACGTCCAGTC GTTAAGATGG AAAAAACGGC GGAAAAAGGC GGTCGCCCGG CGTCCAACGG TAAGCGTTTT ACCTCGCCGG GGCGTAAAAA GAAGGGGCGC TGA
|
Protein sequence | MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITDEFI RGMGAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS SEAKPKVKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR
|
| |