Gene EcolC_3964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3964 
Symbol 
ID6064495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp4355918 
End bp4356382 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content52% 
IMG OID641603377 
ProductMerR family transcriptional regulator 
Protein accessionYP_001726892 
Protein GI170021938 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID[TIGR01950] redox-sensitive transcriptional activator SoxR 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0321214 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA AATTACCCCG CATTAAAGCG CTGCTAACCC CCGGCGAAGT GGCGAAACGC 
AGCGGTGTGG CGGTATCGGC GCTGCATTTC TATGAAAGTA AAGGGTTGAT TACCAGTATC
CGTAACAGCG GCAATCAGCG GCGATATAAA CGTGATGTGT TGCGATATGT TGCAATTATC
AAAATTGCTC AGCGTATTGG CATTCCGCTG GCGACCATTG GTGAAGCGTT TGGCGTGTTG
CCCGAAGGGC ATACGTTAAG TGCGAAAGAG TGGAAACAGC TTTCGTCCCA ATGGCGAGAA
GAGTTGGATC GGCGCATTCA TACCTTAGTG GCGCTGCGTG ACGAACTGGA CGGATGTATT
GGTTGTGGCT GCCTTTCGCG CAGTGATTGC CCGTTGCGTA ACCCGGGCGA CCGCTTAGGA
GAAGAAGGTA CCGGCGCACG CTTGCTGGAA GATGAACAAA ACTAA
 
Protein sequence
MEKKLPRIKA LLTPGEVAKR SGVAVSALHF YESKGLITSI RNSGNQRRYK RDVLRYVAII 
KIAQRIGIPL ATIGEAFGVL PEGHTLSAKE WKQLSSQWRE ELDRRIHTLV ALRDELDGCI
GCGCLSRSDC PLRNPGDRLG EEGTGARLLE DEQN