| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3954 |
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| Symbol | |
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| ID | 6064470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 4342417 |
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| End bp | 4343373 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641603367 |
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| Product | cytochrome c nitrite reductase, NrfD subunit |
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| Protein accession | YP_001726882 |
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| Protein GI | 170021928 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.790103 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGA CTTCCGCATT TCATTTTGAA TCACTGGTGT GGGACTGGCC GATTGCCATC
TACCTGTTTT TGATTGGTAT TTCTGCCGGT CTGGTGACGC TGGCCGTGCT GTTACGTCGC
TTCTACCCGC AGGCGGGCGG TGCAGACAGT ACGTTGCTGC GCACCACGCT GATTGTCGGG
CCTGGCGCGG TGATCCTCGG TCTGTTGATC CTCGTCTTCC ACCTGACAAA GCCGTGGACC
TTCTGGAAGC TGATGTTCCA CTACAGTTTT ACCTCGGTGA TGTCGATGGG GGTGATGCTG
TTTCAGCTCT ACATGGTGGT GCTGGTGCTG TGGCTGGCGA AAATCTTTGA ACATGATTTG
CTTGCCCTGC AACAACGCTG GTTGCCGAAG CTGGGGATCG TGCAAAAGGT TCTGAGCCTG
CTGACGCCCG TTCATCGCGG ACTGGAAACA TTGATGCTGG TGCTGGCGGT GCTGCTGGGG
GCTTATACCG GCTTTCTGCT ATCGGCGCTG AAATCGTATC CGTTCCTCAA TAACCCGATC
CTGCCGGTGC TGTTCCTCTT CTCCGGCATC TCGTCCGGTG CGGCGGTGGC GCTGATCGCC
ATGGCGATAC GCCAACGCAG TAACCCGCAT TCCACGGAAG CGCACTTTGT ACACCGGATG
GAAATCCCTG TGGTATGGGG CGAAATCTTC CTGCTGGTGG CGTTTTTTGT CGGTCTGGCC
CTGGGCGATG ACGGTAAAGT GCGTGCGCTG GTGGCAGCAT TGGGCGGCGG TTTCTGGACG
TGGTGGTTCT GGCTTGGTGT CGCCGGGCTG GGGCTGATTG TGCCAATGTT GCTCAAACCG
TGGGTCAATC GCAGTTCCGG CATTCCTGCC GTGCTGGCGG CGTGTGGGGC CAGTCTGGTC
GGCGTGTTGA TGTTGCGATT TTTCATTCTC TACGCCGGGC AGTTAACGGT GGCGTAA
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| Protein sequence | MTQTSAFHFE SLVWDWPIAI YLFLIGISAG LVTLAVLLRR FYPQAGGADS TLLRTTLIVG
PGAVILGLLI LVFHLTKPWT FWKLMFHYSF TSVMSMGVML FQLYMVVLVL WLAKIFEHDL
LALQQRWLPK LGIVQKVLSL LTPVHRGLET LMLVLAVLLG AYTGFLLSAL KSYPFLNNPI
LPVLFLFSGI SSGAAVALIA MAIRQRSNPH STEAHFVHRM EIPVVWGEIF LLVAFFVGLA
LGDDGKVRAL VAALGGGFWT WWFWLGVAGL GLIVPMLLKP WVNRSSGIPA VLAACGASLV
GVLMLRFFIL YAGQLTVA
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