| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3945 |
|---|
| Symbol | |
|---|
| ID | 6064455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 4329852 |
|---|
| End bp | 4330883 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641603358 |
|---|
| Product | multidrug resistance protein MdtN |
|---|
| Protein accession | YP_001726873 |
|---|
| Protein GI | 170021919 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGTA CGCCGAAAAA AGCTCCTCGC AGTAAATTCC CTGCTCTGTT AGTGGTTGCG
TTGGCGCTGG TTGCCCTTGT TTTCGTTATC TGGCGCGTAG ACAGTGCGCC ATCAACTAAT
GACGCTTACG CGTCAGCAGA TACCATTGAT GTGGTACCGG AAGTCAGCGG CCGCATTGTA
GAACTGGCGG TCACCGACAA CCAGGCAGTC AAACAGGGCG ATTTGCTGTT CCGCATCGAC
CCGCGCCCGT ACGAAGCCAA TCTGGCGAAA GCTGAAGCCT CCCTCGCGGC GCTGGATAAG
CAAATTATGC TCACCCAGCG TAGCGTTGAC GCGCAACAGT TTGGTGCCGA CTCGGTTAAT
GCCACGGTAG AAAAAGCCCG TGCCGCCGCG AAACAGGCCA CAGATACATT ACGCCGCACC
GAGCCATTAC TGAAAGAAGG TTTTGTCTCA GCGGAAGATG TTGACCGTGC AAGAACGGCG
CAGCGCGCCG CAGAAGCGGA TCTTAATGCC GTATTGTTAC AGGCGCAGTC AGCCGCCAGC
GCCGTCAGCG GCGTGGATGC ATTAGTTGCC CAGCGTGCGG CGGTCGAAGC GGATATTGCC
CTGACCAAAC TGCATCTGGA AATGGCGACC GTTCGCGCGC CGTTTGATGG CCGGGTCATT
TCCCTCAAAA CCTCCGTCGG GCAATTTGCT TCTGCCATGC GCCCTATTTT TACCCTAATC
GACACTCGTC ACTGGTATGT GATCGCCAAC TTCCGCGAAA CCGATCTGAA AAATATTCGC
TCAGGTACAC CCGCAACGAT TCGCCTGATG AGTGACAGCG GCAAAACCTT CGAGGGTAAA
GTGGATTCGA TTGGCTACGG CGTGCTACCG GATGACGGCG GCCTGGTGCT GGGCGGCCTG
CCGAAAGTGT CTCGTTCTAT TAACTGGGTC CGCGTTGCCC AGCGTTTTCC GGTCAAAATC
ATGGTCGATA AACCTGACCC GGAAATGTTC CGCATCGGCG CTTCGGCAGT CGCTAATCTT
GAGCCGCAAT AA
|
|---|
| Protein sequence | MESTPKKAPR SKFPALLVVA LALVALVFVI WRVDSAPSTN DAYASADTID VVPEVSGRIV
ELAVTDNQAV KQGDLLFRID PRPYEANLAK AEASLAALDK QIMLTQRSVD AQQFGADSVN
ATVEKARAAA KQATDTLRRT EPLLKEGFVS AEDVDRARTA QRAAEADLNA VLLQAQSAAS
AVSGVDALVA QRAAVEADIA LTKLHLEMAT VRAPFDGRVI SLKTSVGQFA SAMRPIFTLI
DTRHWYVIAN FRETDLKNIR SGTPATIRLM SDSGKTFEGK VDSIGYGVLP DDGGLVLGGL
PKVSRSINWV RVAQRFPVKI MVDKPDPEMF RIGASAVANL EPQ
|
|---|
| |