| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3793 |
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| Symbol | cpdB |
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| ID | 6067232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 4152158 |
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| End bp | 4154101 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641603206 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_001726725 |
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| Protein GI | 170021771 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.377475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGT TTAGCGCAAC GCTCCTGGCC ACGCTGATTG CCGCCAGTGT GAATGCAGCG
ACGGTCGATC TACGTATCAT GGAAACCACT GATCTGCATA GCAACATGAT GGATTTCGAT
TATTACAAAG ACACCGCCAC GGAAAAATTC GGACTGGTAC GTACGGCAAG CCTGATTAAC
GATGCCCGCA ATGAAGTGAA AAACAGCGTA CTGGTCGATA ACGGCGATTT GATTCAGGGG
AGTCCGCTGG CCGATTACAT ATCGGCGAAA GGATTAAAAG CAGGTGATGT TCATCCGGTT
TATAAGGCGC TGAATACGCT GGATTATACG GTCGGTACAC TCGGCAATCA TGAATTTAAC
TACGGTCTGG ATTACCTGAA AAATGCGTTG GCGGGAGCGA AATTCCCTTA TGTAAATGCC
AACGTCATTG ACGCCAGAAC CAAACAGCCA ATGTTTACAC CGTATTTAAT TAAAGATACC
GAAGTGGTCG ATAAAGACGG AAAAAAACAG ACGCTGAAGA TTGGCTATAT TGGCGTCGTG
CCGCCGCAAA TCATGGGCTG GGATAAAGCT AATTTATCCG GAAAAGTGAC GGTGAATGAT
ATTACCGAAA CCGTGCGCAA ATACGTGCCT GAAATGCGCG AGAAAGGTGC CGATGTCGTT
GTCGTTCTGG CGCATTCCGG GCTATCTGCC GATCCGTATA AAGTGATGGC GGAAAACTCA
GTTTATTACC TCAGTGAAAT TCCTGGCGTT AACGCCATTA TGTTTGGCCA TGCTCACGCC
GTTTTCCCAG GTAAAGATTT TGCTGATATC GAAGGGGCTG ATATCGCGAA AGGCACGCTG
AATGGTGTTC CGGCGGTAAT GCCGGGCATG TGGGGCGATC ATCTTGGGGT GGTCGACTTA
CAACTCAGTA ATAACAGCGG TAAATGGCAG GTGACGCAGG CGAAAGCGGA AGCACGGCCG
ATTTACGACA TCGCCAATAA AAAATCCCTC GCGGCGGAAG ACAGCAAGCT GGTAGAAACA
CTCAAAGCCG ATCACGATGC CACACGCCAG TTCGTCAGCA AGCCAATCGG TAAATCCGCC
GACAATATGT ATAGCTATCT GGCGCTGGTG CAGGACGATC CGACCGTGCA GGTGGTGAAC
AACGCGCAAA AAGCGTATGT CGAGCATTAC ATTCAGGGCG ATCCGGATCT GGCAAAACTG
CCGGTGCTTT CAGCTGCTGC ACCGTTTAAA GTTGGTGGTC GCAAAAATGA TCCGGCAAGC
TATGTGGAGG TGGAAAAAGG CCAGTTGACC TTCCGTAATG CCGCCGATCT TTATCTCTAC
CCCAATACGC TGATTGTGGT GAAAGCCAGC GGTAAAGAGG TGAAAGAGTG GCTGGAGTGC
TCCGCCGGAC AGTTTAACCA GATTGATCCT GACAACACGA AACCACAGTC ACTCATCAAC
TGGGATGGTT TCCGCACCTA TAACTTTGAT GTGATTGATG GTGTGAATTA TCAGATTGAT
GTTACCCAGC CTGCCCGTTA TGACGGCGAG TGCCAGATGG TTAATGCCAA TGCGGAAAGG
ATTAAGAACC TGACCTTTAA TGGCAAGCCG ATTGATCCGA ACGCCATGTT CCTGGTTGCC
ACCAATAACT ATCGCGCTTA CGGCGGCAAA TTTGCCGGTA CGGGCGACAG CCATATCGCT
TTTGCTTCAC CGGATGAGAA CCGCTCGGTG CTGGCAGCGT GGATTGCTGA TGAGTCGAAA
CGTGCGGGGG AAATTCACCC GGCGGCAGAT AACAACTGGC GTTTAGCACC GATAGCTGGC
GATAAGAAAC TGGATATCCG TTTCGAAACC TCTCCATCAG ATAAAGCCGC GGCGTTTATT
AAAGAGAAAG GGCAATATCC GATGAATAAA GTCGCGACCG ATGATATCGG GTTTGCGATT
TATCAGGTGG ATTTGAGTAA GTAA
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| Protein sequence | MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIN
DARNEVKNSV LVDNGDLIQG SPLADYISAK GLKAGDVHPV YKALNTLDYT VGTLGNHEFN
YGLDYLKNAL AGAKFPYVNA NVIDARTKQP MFTPYLIKDT EVVDKDGKKQ TLKIGYIGVV
PPQIMGWDKA NLSGKVTVND ITETVRKYVP EMREKGADVV VVLAHSGLSA DPYKVMAENS
VYYLSEIPGV NAIMFGHAHA VFPGKDFADI EGADIAKGTL NGVPAVMPGM WGDHLGVVDL
QLSNNSGKWQ VTQAKAEARP IYDIANKKSL AAEDSKLVET LKADHDATRQ FVSKPIGKSA
DNMYSYLALV QDDPTVQVVN NAQKAYVEHY IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS
YVEVEKGQLT FRNAADLYLY PNTLIVVKAS GKEVKEWLEC SAGQFNQIDP DNTKPQSLIN
WDGFRTYNFD VIDGVNYQID VTQPARYDGE CQMVNANAER IKNLTFNGKP IDPNAMFLVA
TNNYRAYGGK FAGTGDSHIA FASPDENRSV LAAWIADESK RAGEIHPAAD NNWRLAPIAG
DKKLDIRFET SPSDKAAAFI KEKGQYPMNK VATDDIGFAI YQVDLSK
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