Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_3565 |
Symbol | ddl |
ID | 6064984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 3896428 |
End bp | 3897348 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641602982 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_001726506 |
Protein GI | 170021552 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00231129 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00551648 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTGATA AAATCGCGGT CCTGTTGGGT GGGACCTCCG CTGAGCGGGA AGTTTCTCTG AATTCTGGCG CAGCGGTGTT AGCCGGACTG CGTGAAGGCG GTATTGACGC GTATCCTGTC GACCCGAAAG AAGTCGACGT GACGCAACTG AAGTCGATGG GCTTTCAGAA AGTGTTTATC GCGCTACACG GTCGCGGCGG TGAAGATGGT ACGCTGCAGG GGATGCTCGA GCTGATGGGC TTGCCTTATA CCGGAAGCGG AGTGATGGCA TCTGCGCTTT CAATGGATAA ACTACGCAGC AAACTTCTAT GGCAAGGTGC CGGTTTACCG GTCGCGCCGT GGGTAGCGTT AACCCGCGCA GAGTTTGAAA AAGGCCTGAG CGATAAGCAG TTAGCAGAAA TTTCTGCTCT GGGTTTGCCG GTTATCGTTA AGCCGAGCCG CGAAGGTTCC AGTGTGGGAA TGTCAAAAGT AGTAGCAGAA AATGCTCTAC AAGATGCATT AAGATTGGCA TTTCAGCACG ATGAAGAAGT ATTGATTGAA AAATGGCTAA GTGGGCCGGA GTTCACGGTT GCGATACTCG GTGAAGAAAT TTTACCGTCA ATACGTATTC AACCGTCCGG AACCTTCTAT GATTATGAGG CGAAGTATCT CTCTGATGAG ACACAGTATT TCTGCCCCGC AGGTCTGGAA GCGTCACAAG AGGCCAATTT GCAGGCATTA GTGCTGAAAG CATGGACGAC GTTAGGTTGC AAAGGATGGG GACGTATTGA CGTTATGCTG GACAGCGATG GACAGTTTTA TCTGCTGGAA GCCAATACCT CACCGGGTAT GACCAGCCAC AGCCTGGTGC CGATGGCGGC ACGTCAGGCA GGTATGAGCT TCTCGCAGTT GGTAGTACGA ATTCTGGAAC TGGCGGACTA A
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Protein sequence | MTDKIAVLLG GTSAEREVSL NSGAAVLAGL REGGIDAYPV DPKEVDVTQL KSMGFQKVFI ALHGRGGEDG TLQGMLELMG LPYTGSGVMA SALSMDKLRS KLLWQGAGLP VAPWVALTRA EFEKGLSDKQ LAEISALGLP VIVKPSREGS SVGMSKVVAE NALQDALRLA FQHDEEVLIE KWLSGPEFTV AILGEEILPS IRIQPSGTFY DYEAKYLSDE TQYFCPAGLE ASQEANLQAL VLKAWTTLGC KGWGRIDVML DSDGQFYLLE ANTSPGMTSH SLVPMAARQA GMSFSQLVVR ILELAD
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