| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3258 |
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| Symbol | |
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| ID | 6066834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 3565225 |
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| End bp | 3568227 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641602673 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001726207 |
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| Protein GI | 170021253 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.372144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTCCT GGAAAAAGAA ACTTGTAGTA TCACAATTAG CATTGGCTTG CACTCTGGCT
ATCACCTCTC AGGCTAATGC AGCGACCAAC GATATTTCTG GTCAAACTTA CAATACTTTC
CATCACTACA ACGACGCCAC CTATGCTGAT GACGTTTACT ATGATGGTTA TGTAGGCTGG
AACAACTATG CCGCTGATAG CTATTACAAC GGCGATATCT ACCCGGTCAT TAATAACGCT
ACCGTTAACG GCGTGATTTC TACCTACTAT CTGGACGACG GTATTTCTAC CAATACCAAC
GCCAATAGTC TGACAATCAA AAACAGCACT ATTCACGGTA TGATTTATTC CGAGTGCATG
ACAACTGATT GTGCTGATCG TGCGGATGAT TACTACCATG ACCGTCTGGC GCTGACTGTT
GATAATTCAA CGATCGACGA CAACTACGAA CACTACACAT ATAACGGCAC TTACAATAAT
GCCGCTGATA CTCATGTTGT AGACGTTTAC AACATTGGTA CGGCTATTAC TCTGGATCAG
GAAGTTGATC TGTCCATCAC TAATAACTCT CACGTTGCGG GTATTACGTT GACTCAGGGT
TATGAGTGGG AAGATATTGA CGACAACACT GTCAGCACTG GCGTAAACAG CAGCGAAGTG
TTTAATAACA CCATCACTGT TAAAGATTCT ACCGTAACCT CTGGTTCATG GACTGATGAA
GGTACTACTG GTTGGTTCGG TAATACAGGT AATGCCAGCG ATTATAGTGG TAAATCTAAC
TTTGTCACCG TAGATACTGA CGGAGATGGT GTTGCTGATA GCACTATTGC AAGCTGGGAT
GATGTTGCAT TAGCTGTAGT TGCACATCCG AATGCTGATA ATGCTATGCA GACCACCGCT
GACTTTAGTA ACTCTACTTT GATGGGCGAT GTAATCTTCT CTAGCAACTT TGATGAAAAC
TTCTTCCCAC GTGGTGCAGA TAGTTATCGC GATGCTGATG GTGAAGTAGA CACCAACGGT
TGGGATGGAA CAGATCGCCT GGATCTGACA TTAAATAACG GTAGTAAATG GGTAGGGGCA
GCACAATCTG TTCATCAAAC TGGTTCTATT GATGTTGATG GAGATGGTAA AGGTGACATC
GCTACATACG GTGTTGGCAC CGAGGCAACT GCAACTCTGA TTGATATTGA GGATAATAGC
CTGTGGCCGT TATCAACCGT TGGTGTTGAA AACGATGATA CAAGTTACAG TGAATTCGAT
CATATTACTG GTAATCAGGT TTACCAGAGC GGTCTGTTCA ATGTGACCCT GAATACCGGT
TCACAGTGGG ATACCACCAA AACTTCTCTG ATTGATACTC TGAGCATCAA CAGTGGTTCA
ACTGTTAATG TTGCTGATTC AACGCTGATT TCTGACTCTA TCTCTCTGAC AGGTCTTTCT
GCGCTGAACA TCAACGAAGA TGGTCATGTT GCAACTGATT CACTGACTGT CGACAACAGT
ACCGTAACCA TTTCTGATGA AGTTTCTGCT GGTTGGGCTG TAGGTGATGC TGCTCTGTAT
GCCAACAACA TCAAAGTGAC TAACGACGGT ATTCTGGATG TAGGTAACAC TGCGGCGAAT
GCTCTGCAGG TTGATACTCT GAACCTGACC AGCACTACTG ATACCAGTGG TAACATTCAC
GCTGGTGTGT TCAACATCGA AAGCAACCGC TTCGTACTTG ATGCAGACCT GACCAACGAC
CGTACCAACG ATACTACCAA GTCAAACTAC GGTTATGGCT TAATCGCAAT GAACTCTGAT
GGTCACCTGA CCATTAACGG TAACGGCGAT AACGACAACA CTGCTTCTAT CGAAGCTGGT
CAGAACGAAG TTGATAACAA CGGTGACCAT GTTGCAGCTG CAACCGGTAA CTACAAAGTT
CGTATCGACA ACGCTACTGG TGCTGGTTCT ATCGCTGACT ACAACGGCAA CGAGCTGATC
TACGTCAACG ACAAAAATAG CAACGCGACC TTCTCTGCTG CTAACAAAGC TGACCTGGGT
GCATACACCT ATCAGGCTGA ACAGCGCGGT AACACCGTTG TTCTGCAACA GATGGAGCTG
ACCGACTACG CTAACATGGC GCTGAGCATC CCTTCTGCGA ACACCAATAT CTGGAACCTG
GAACAAGACA CCGTTGGTAC TCGTCTGACC AACTCTCGTC ATGGCCTGGC TGATAACGGC
GGCGCATGGG TAAGCTACTT CGGTGGTAAC TTCAACGGCG ACAACGGCAC CATCAACTAT
GATCAGGATG TTAACGGCAT CATGGTCGGT GTTGATACCA AAATTGACGG TAACAACGCT
AAGTGGATCG TCGGTGCGGC TGCAGGCTTC GCTAAAGGTG ACATGAATGA CCGTTCTGGT
CAGGTAGATC AAGACAGCCA GACTGCCTAC ATCTACTCTT CTGCTCACTT CGCGAACAAC
GTCTTTGTTG ATGGTAGCTT GAGCTACTCT CACTTCAACA ACGACCTGTC TGCAACCATG
AGCAACGGTA CTTACGTTGA CGGTAGCACC AACTCCGACG CTTGGGGCTT CGGCTTGAAA
GCCGGTTACG ACTTCAAACT GGGTGATGCT GGTTATGTGA CTCCTTACGG CAGCATTTCT
GGTCTGTTCC AGTCTGGTGA TGACTACCAG CTGAGCAACG ACATGAAAGT TGACGGTCAG
TCTTACGACA GCATGCGTTA TGAACTGGGT GTAGATGCAG GTTATACCTT CACCTACAGC
GAAGACCAGG CTCTGACTCC GTACTTCAAA CTGGCTTACG TCTACGACGA CTCTAACAAC
GATAACGATG TGAACGGTGA TTCCATCGAT AACGGTACTG AAGGGTCTGC GGTACGTGTT
GGTCTGGGTA CTCAGTTCAG CTTCACCAAG AACTTCAGCG CCTATACCGA TGCTAACTAC
CTCGGTGGTG GTGACGTAGA TCAAGATTGG TCCGCGAACG TGGGTGTTAA ATATACCTGG
TAA
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| Protein sequence | MHSWKKKLVV SQLALACTLA ITSQANAATN DISGQTYNTF HHYNDATYAD DVYYDGYVGW
NNYAADSYYN GDIYPVINNA TVNGVISTYY LDDGISTNTN ANSLTIKNST IHGMIYSECM
TTDCADRADD YYHDRLALTV DNSTIDDNYE HYTYNGTYNN AADTHVVDVY NIGTAITLDQ
EVDLSITNNS HVAGITLTQG YEWEDIDDNT VSTGVNSSEV FNNTITVKDS TVTSGSWTDE
GTTGWFGNTG NASDYSGKSN FVTVDTDGDG VADSTIASWD DVALAVVAHP NADNAMQTTA
DFSNSTLMGD VIFSSNFDEN FFPRGADSYR DADGEVDTNG WDGTDRLDLT LNNGSKWVGA
AQSVHQTGSI DVDGDGKGDI ATYGVGTEAT ATLIDIEDNS LWPLSTVGVE NDDTSYSEFD
HITGNQVYQS GLFNVTLNTG SQWDTTKTSL IDTLSINSGS TVNVADSTLI SDSISLTGLS
ALNINEDGHV ATDSLTVDNS TVTISDEVSA GWAVGDAALY ANNIKVTNDG ILDVGNTAAN
ALQVDTLNLT STTDTSGNIH AGVFNIESNR FVLDADLTND RTNDTTKSNY GYGLIAMNSD
GHLTINGNGD NDNTASIEAG QNEVDNNGDH VAAATGNYKV RIDNATGAGS IADYNGNELI
YVNDKNSNAT FSAANKADLG AYTYQAEQRG NTVVLQQMEL TDYANMALSI PSANTNIWNL
EQDTVGTRLT NSRHGLADNG GAWVSYFGGN FNGDNGTINY DQDVNGIMVG VDTKIDGNNA
KWIVGAAAGF AKGDMNDRSG QVDQDSQTAY IYSSAHFANN VFVDGSLSYS HFNNDLSATM
SNGTYVDGST NSDAWGFGLK AGYDFKLGDA GYVTPYGSIS GLFQSGDDYQ LSNDMKVDGQ
SYDSMRYELG VDAGYTFTYS EDQALTPYFK LAYVYDDSNN DNDVNGDSID NGTEGSAVRV
GLGTQFSFTK NFSAYTDANY LGGGDVDQDW SANVGVKYTW
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