| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3213 |
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| Symbol | |
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| ID | 6066691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 3519470 |
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| End bp | 3521332 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641602628 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001726162 |
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| Protein GI | 170021208 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000252771 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTTTTG ATATTGCCAA ATACCCGACC CTGGCACTGG TCGACTCCAC CCAGGAGTTA
CGACTGTTGC CGAAAGAGAG TTTACCGAAA CTCTGCGACG AACTGCGCCG CTATTTACTC
GACAGCGTGA GCCGTTCCAG CGGGCACTTC GCCTCCGGGC TGGGCACGGT CGAACTGACC
GTGGCGCTGC ACTATGTCTA CAACACCCCG TTTGACCAAT TGATTTGGGA TGTGGGGCAT
CAGGCTTATC CGCATAAAAT TTTGACCGGA CGCCGCGACA AAATCGGCAC CATCCGTCAG
AAAGGCGGCC TGCACCCGTT CCCGTGGCGC GGCGAAAGCG AATATGACGT ATTAAGCGTC
GGGCATTCAT CAACCTCCAT CAGTGCCGGA ATTGGTATTG CGGTTGCTGC CGAGAAAGAA
GGCAAAAATC GCCGTACCGT CTGTGTAATC GGCGATGGCG CGATTACCGC AGGCATGGCG
TTTGAAGCGA TGAATCACGC GGGCGATATC CGTCCTGATA TGCTGGTGGT CCTCAACGAC
AACGAAATGT CGATTTCCGA AAATGTCGGC GCGCTCAACA ACCATCTGGC GCAGCTGCTT
TCCGGTAAGC TTTACTCTTC ACTGCGCGAA GGCGGGAAAA AAGTTTTCTC TGGCGTGCCA
CCCATTAAAG AGCTACTCAA ACGTACCGAA GAACATATTA AAGGCATGGT AGTCCCTGGC
ACGTTGTTTG AAGAGCTGGG CTTTAACTAC ATCGGCCCGG TTGACGGTCA CGATGTGCTG
GGGCTTATCA CCACGCTGAA GAACATGCGT GACCTGAAAG GCCCGCAGTT CCTGCATATC
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCAGAAAAAG ACCCAATCAC TTTCCACGCC
GTGCCTAAAT TTGATCCCTC CAGCGGTTGT TTGCCGAAAA GTAGCGGCGG TTTGCCGAGC
TATTCAAAAA TCTTTGGCGA CTGGTTGTGC GAAACGGCAG CGAAAGACAA CAAGCTGATG
GCGATTACTC CGGCGATGCG TGAAGGTTCC GGTATGGTCG AGTTTTCTCG TAAATTCCCG
GATCGCTATT TTGATGTAGC GATTGCCGAG CAACACGCAG TGACCTTTGC TGCGGGACTG
GCCATTGGTG GATACAAACC CATTGTCGCG ATCTACTCCA CCTTCCTGCA ACGCGCCTAT
GATCAGGTGC TGCATGACGT GGCAATTCAA AAACTCCCGG TCCTGTTCGC CATCGACCGC
GCGGGCATTG TTGGTGCTGA CGGTCAAACC CATCAGGGTG CTTTTGATCT CTCTTACCTG
CGCTGCATAC CGGAAATGGT CATTATGACC CCGAGCGATG AAAACGAATG TCGCCAGATG
CTCTATACCG GCTATCACTA TAACGATGGC CCGTCAGCGG TGCGCTACCC GCGTGGCAAC
GCGGTAGGCG TGGAGCTGAC GCCGCTGGAA AAACTGCCAA TTGGCAAAGG CATTGTGAAG
CGTCGTGGCG AGAAACTGGC GATCCTTAAC TTTGGTACGC TGATGCCAGA CGCGGCGAAA
GTCGCTGAAT CGCTGAACGC CACGCTGGTC GATATGCGTT TTGTGAAACC GCTTGATGAA
GCGTTAATTC TGGAAATGGC CGCCAGCCAT GAAGCGCTGG TCACCGTAGA AGAAAACGCC
ATTATGGGCG GCGCAGGTAG CGGAGTGAAC GAAGTGCTGA TGGCCCATCG TAAACCAGTA
CCCGTGCTGA ACATTGGTCT GCCGGACTTC TTTATTCCGC AAGGAACTCA GGAAGAAATG
CGCGCCGAAC TCGGCCTCGA TGCCGCCGGT ATGGAAGCCA AAATCAAGGC CTGGCTGGCA
TAA
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| Protein sequence | MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV
GHSSTSISAG IGIAVAAEKE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVVLND
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG
TLFEELGFNY IGPVDGHDVL GLITTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA
VPKFDPSSGC LPKSSGGLPS YSKIFGDWLC ETAAKDNKLM AITPAMREGS GMVEFSRKFP
DRYFDVAIAE QHAVTFAAGL AIGGYKPIVA IYSTFLQRAY DQVLHDVAIQ KLPVLFAIDR
AGIVGADGQT HQGAFDLSYL RCIPEMVIMT PSDENECRQM LYTGYHYNDG PSAVRYPRGN
AVGVELTPLE KLPIGKGIVK RRGEKLAILN FGTLMPDAAK VAESLNATLV DMRFVKPLDE
ALILEMAASH EALVTVEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEM
RAELGLDAAG MEAKIKAWLA
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