Gene EcolC_3116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3116 
Symbol 
ID6066337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp3413717 
End bp3414532 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content53% 
IMG OID641602532 
ProductDNA-binding transcriptional repressor AllR 
Protein accessionYP_001726066 
Protein GI170021112 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.129581 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGAAG TTAGACGGCG CGGCAGGCCA GGACAGGCGG AGCCTGTGGC ACAGAAGGGC 
GCACAGGCGT TAGAGCGGGG AATTGCGATT CTGCAATATT TGGAAAAAAG TGGGGGAAGT
TCGTCGGTTA GCGATATTTC TCTCAATCTG GATTTGCCGC TCTCCACGAC CTTTCGCTTG
CTGAAGGTTT TACAGGCAGC GGATTTTGTC TATCAGGACA GTCAATTAGG CTGGTGGCAT
ATAGGATTAG GTGTCTTTAA CGTCGGTGCG GCGTACATCC ATAACCGCGA TGTCCTCTCC
GTCGCCGGGC CGTTTATGCG CCGCCTGATG TTACTTTCCG GCGAAACGGT CAATGTCGCG
ATCCGTAACG GCAATGAAGC GGTATTAATT GGTCAGTTAG AGTGTAAATC GATGGTCAGG
ATGTGTGCGC CACTGGGCAG TCGTCTGCCA CTGCATGCTT CCGGTGCGGG CAAAGCGCTG
CTTTATCCGC TGGCGGAAGA GGAGTTGATG AGCATCATTC TGCAAACCGG TTTGCAGCAG
TTTACGCCAA CTACGCTTGT GGATATGCCC ACCTTGCTGA AGGACCTGGA ACAAGCGCGT
GAACTGGGCT ATACCGTAGA TAAAGAAGAG CATGTTGTAG GTCTGAATTG CATAGCTTCA
GCAATTTACG ATGATGTCGG TAGTGTTGTT GCCGCTATCT CCATCTCCGG GCCTTCATCA
AGACTGACAG AAGATCGTTT TGTCAGTCAG GGTGAGCTGG TCAGAGACAC CGCCCGCGAT
ATCAGCACGG CGTTGGGACT GAAAGCACAT CCATAA
 
Protein sequence
MTEVRRRGRP GQAEPVAQKG AQALERGIAI LQYLEKSGGS SSVSDISLNL DLPLSTTFRL 
LKVLQAADFV YQDSQLGWWH IGLGVFNVGA AYIHNRDVLS VAGPFMRRLM LLSGETVNVA
IRNGNEAVLI GQLECKSMVR MCAPLGSRLP LHASGAGKAL LYPLAEEELM SIILQTGLQQ
FTPTTLVDMP TLLKDLEQAR ELGYTVDKEE HVVGLNCIAS AIYDDVGSVV AAISISGPSS
RLTEDRFVSQ GELVRDTARD ISTALGLKAH P