| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3005 |
|---|
| Symbol | holA |
|---|
| ID | 6065950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 3285629 |
|---|
| End bp | 3286660 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641602422 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001725957 |
|---|
| Protein GI | 170021003 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00124747 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGGT TGTACCCGGA ACAACTCCGC GCGCAGCTCA ATGAAGGGCT GCGCGCGGCG
TATCTTTTAC TTGGTAACGA TCCTCTGTTA TTGCAGGAAA GCCAGGACGC TGTTCGTCAG
GTAGCTGCGG CACAAGGATT CGAAGAACAC CACACTTTTT CCATTGATCC CAACACTGAC
TGGAATGCGA TCTTTTCGTT ATGCCAGGCC ATGAGTCTGT TTGCCAGTCG ACAAACGCTA
TTGCTGTTGT TACCAGAAAA CGGACCAAAT GCGGCGATCA ATGAACACCT CCTCACGCTC
ACCGGATTGC TGCATGACGA TCTGCTGTTG ATCGTCCGCG GTAATAAATT AAGCAAAGCG
CAAGAAAATG CCGCCTGGTT TACTGCTCTT GCGAATCGCA GCGTGCAGGT GACCTGTCAG
ACACCGGAGC AGGCTCAGCT TCCCCGCTGG GTTGCTGCGC GCGCAAAACA GCTCAACTTA
GAACTGGATG ACGCGGCAAA TCAGGTGCTC TGCTACTGTT ATGAAGGTAA CCTGCTGGCG
CTGGCTCAGG CACTGGAGCG TTTATCGCTG CTCTGGCCAG ACGGCAAATT GACATTACCG
CGCGTTGAAC AGGCGGTGAA TGATGCCGCG CATTTCACCC CTTTTCATTG GGTTGATGCT
TTGTTGATGG GAAAAAGTAA GCGCGCGTTG CATATTCTTC AGCAACTGCG TCTGGAAGGC
AGCGAGCCGG TTATTTTGTT GCGCACATTA CAACGTGAAC TGTTGTTACT GGTTAACCTG
AAACGCCAGT CTGCCCATAC GCCACTGCGT GCGTTGTTTG ATAAGCATCG GGTATGGCAG
AACCGCCGGG GCATGATGGG CGAGGCGTTA AATCGCTTAA GTCAGCCGCA GTTACGTCAG
GCCGTGCAAC TCCTGACACG AACGGAACTC ACCCTCAAAC AAGATTACGG TCAGTCAGTG
TGGGCAGAGC TGGAAGGGTT ATCTCTTCTG TTGTGCCATA AACCCCTGGC GGACGTATTT
ATCGACGGTT GA
|
|---|
| Protein sequence | MIRLYPEQLR AQLNEGLRAA YLLLGNDPLL LQESQDAVRQ VAAAQGFEEH HTFSIDPNTD
WNAIFSLCQA MSLFASRQTL LLLLPENGPN AAINEHLLTL TGLLHDDLLL IVRGNKLSKA
QENAAWFTAL ANRSVQVTCQ TPEQAQLPRW VAARAKQLNL ELDDAANQVL CYCYEGNLLA
LAQALERLSL LWPDGKLTLP RVEQAVNDAA HFTPFHWVDA LLMGKSKRAL HILQQLRLEG
SEPVILLRTL QRELLLLVNL KRQSAHTPLR ALFDKHRVWQ NRRGMMGEAL NRLSQPQLRQ
AVQLLTRTEL TLKQDYGQSV WAELEGLSLL LCHKPLADVF IDG
|
|---|
| |