Gene EcolC_2479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_2479 
SymbolpotC 
ID6066522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp2727548 
End bp2728342 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content50% 
IMG OID641601885 
Productspermidine/putrescine ABC transporter membrane protein 
Protein accessionYP_001725437 
Protein GI170020483 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0237436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.58915 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGTC GACTGCTTCG CGGCGGTTTT ATGACCGCTA TCTACGCGTA CCTGTATATC 
CCAATCATTA TTTTGATTGT GAACTCCTTT AACAGCTCGC GCTTTGGCAT CAACTGGCAG
GGTTTTACCA CCAAATGGTA TAGCCTGCTG ATGAACAACG ACAGCCTGTT ACAGGCAGCG
CAGCATTCAC TAACAATGGC GGTGTTTTCG GCGACGTTTG CTACGCTTAT CGGTTCACTG
ACGGCAGTTG CGCTGTACCG TTATCGCTTT CGCGGTAAGC CGTTCGTTAG CGGAATGCTG
TTTGTGGTAA TGATGTCACC AGATATCGTG ATGGCAATTT CGCTGCTGGT GCTGTTTATG
CTGCTGGGTA TTCAGCTTGG CTTCTGGTCG CTGCTGTTCT CGCATATCAC CTTCTGCCTG
CCATTTGTGG TGGTGACGGT GTATTCGCGC CTGAAAGGTT TTGACGTGCG GATGCTGGAA
GCGGCGAAAG ATCTCGGTGC CAGCGAATTT ACCATTCTGC GAAAAATCAT TCTGCCACTG
GCAATGCCAG CGGTGGCGGC GGGCTGGGTG TTAAGCTTTA CCCTGTCGAT GGACGATGTG
GTAGTTTCTT CGTTCGTCAC CGGACCAAGC TATGAAATTC TGCCGTTAAA AATTTATTCG
ATGGTCAAAG TCGGCGTATC GCCGGAAGTT AACGCGCTGG CAACCATATT ACTGGTGCTG
TCGCTGGTGA TGGTTATTGC CAGCCAGCTT ATTGCTCGTG ATAAAACGAA AGGTAACACA
GGGGACGTTA AATGA
 
Protein sequence
MIGRLLRGGF MTAIYAYLYI PIIILIVNSF NSSRFGINWQ GFTTKWYSLL MNNDSLLQAA 
QHSLTMAVFS ATFATLIGSL TAVALYRYRF RGKPFVSGML FVVMMSPDIV MAISLLVLFM
LLGIQLGFWS LLFSHITFCL PFVVVTVYSR LKGFDVRMLE AAKDLGASEF TILRKIILPL
AMPAVAAGWV LSFTLSMDDV VVSSFVTGPS YEILPLKIYS MVKVGVSPEV NALATILLVL
SLVMVIASQL IARDKTKGNT GDVK