Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_2168 |
Symbol | |
ID | 6067485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | + |
Start bp | 2378141 |
End bp | 2380540 |
Gene Length | 2400 bp |
Protein Length | 799 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641601575 |
Product | cAMP phosphodiesterase |
Protein accession | YP_001725134 |
Protein GI | 170020180 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.300565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTAA CCGATGCGGA AAATGCCGCC GATGGCATTT TTTTCCCCGC CCTTGAACAA AATATGATGG GCGCGGTGTT AATTAACGAA AATGATGAAG TGATGTTTTT CAACCCCGCC GCAGAGAAGC TCTGGGGGTA CAAACGTGAA GAAGTCATTG GCAATAACAT TGATATGCTG ATTCCGCGGG ATTTGCGTCC TGCGCATCCT GAATACATTC GTCATAACCG TGAAGGTGGT AAAGCGCGCG TCGAGGGGAT GAGTCGGGAG CTGCAGCTGG AGAAAAAAGA CGGCAGTAAA ATCTGGACCC GTTTTGCGCT ATCGAAAGTG AGCGCCGAGG GGAAAGTTTA TTACCTGGCG CTGGTACGGG ATGCCAGCGT AGAAATGGCG CAAAAAGAAC AGACCCGACA ATTGATTATT GCCGTTGACC ATCTCGACCG ACCGGTGATT GTCCTCGATC CGGAACGCCA TATTGTGCAG TGCAATCGCG CATTTACCGA AATGTTTGGT TACTGCATTA GCGAAGCCAG CGGTATGCAG CCCGATACAC TCCTGAACAT TCCTGAATTC CCTGCCGATA ACCGCATTCG TTTACAACAG TTGCTATGGA AAACCGCCCG CGATCAGGAC GAATTTCTGC TGTTGACGCG CACCGGTGAA AAAATCTGGA TTAAAGCCTC TATCAGCCCG GTTTATGACG TGCTCGCGCA TCTGCAGAAC CTGGTAATGA CTTTCTCGGA TATCACCGAA GAACGGCAAA TCCGCCAGCT TGAAGGCAAT ATTCTCGCCG CCATGTGCAG CAGCCCGCCA TTTCATGAAA TGGGGGAAAT CATTTGTCGT AACATCGAAT CTGTACTCAA CGAATCGCAT GTTTCGCTGT TCGCACTGCG CAACGGGATG CCGATACACT GGGCGTCATC TTCCCACGGT GCAGAAATTC AAAATGCGCA AAGCTGGTCA GCGACCATTC GTCAGCGTGA TGGCGCGCCT GCGGGGATCC TGCAAATTAA AACCTCGTCA GGAGCAGAAA CCAGCGCCTT TATCGAACGC GTGGCAGATA TCAGCCAGCA TATGGCCGCG CTGGCGCTGG AACAGGAAAA AAGCCGTCAG CATATTGAAC AACTCATCCA ATTTGATCCG ATGACCGGTC TGCCAAATCG CAATAACCTG CACAATTACC TCGATGACCT GGTCGACAAA GCCGTCTCTC CCGTGGTGTA TCTCATCGGT GTTGACCATA TTCAGGATGT GATTGATAGC CTTGGCTATG CGTGGGCCGA TCAGGCATTG CTGGAAGTGG TCAATCGCTT TCGTGAAAAA CTCAAACCGG ATCAGTATCT CTGTCGTATC GAAGGTACGC AGTTTGTCCT CGTGAGCCTC GAAAACGACG TCAGTAACAT TACCCAAATC GCCGATGAGC TACGGAATGT GGTCAGCAAG CCGATAATGA TTGACGATAA ACCCTTCCCG CTTACCTTGA GTATTGGCAT CAGCTACGAC GTGGGTAAAA ACCGCGATTA CTTGCTCTCC ACTGCTCACA ATGCAATGGA TTATATTCGC AAGAATGGCG GTAACGGCTG GCAGTTCTTC AGCCCGGCGA TGAACGAAAT GGTAAAAGAG CGTTTGTTTT TAGGCGCAGC GCTGAAAGAA GCGATTAGCA ATAACCAACT GAAACTGGTT TACCAGCCGC AAATCTTCGC AGAAACGGGT GAACTGTACG GCATCGAAGC CCTTGCTCGC TGGCACGATC CCCTGCATGG TCATGTGCCC CCTTCACGGT TTATTCCTCT CGCAGAAGAG ATTGGTGAAA TCGAAAATAT TGGGCGCTGG GTCATCGCGG AAGCTTGCCG TCAGTTAGCA GAATGGCGTA GCCAGAATAT TCATATCCCG GCGCTTTCCG TTAACTTGTC GGCACTGCAC TTTCGCAGTA ATCAGCTGCC TAATCAGGTG TCTGATGCAA TGCAAGCCTG GGGTATTGAC GGCCACCAGC TGACGGTGGA AATCACGGAA AGCATGATGA TGGAACACGA TACCGAAATC TTTAAGCGCA TTCAGATCCT GCGCGATATG GGCGTGGGCT TATCGGTAGA TGATTTTGGC ACGGGCTTTT CCGGATTATC CCGCTTAGTC AGTCTTCCGG TAACGGAAAT CAAAATTGAC AAAAGTTTTG TCGATCGTTG TCTGACGGAA AAACGCATCC TTGCCTTACT TGAAGCCATT ACCAGCATTG GGCAAAGCCT CAATTTAACC GTCGTGGCGG AAGGCGTCGA AACCAAAGAG CAATTTGAGA TGCTACGCAA GATCCACTGT CGCGTTATTC AGGGATATTT CTTTTCCCGC CCCCTACCCG CCGAAGAAAT TCCAGGCTGG ATGAGCAGCG TGTTACCGCT GAAAATCTGA
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Protein sequence | MKLTDAENAA DGIFFPALEQ NMMGAVLINE NDEVMFFNPA AEKLWGYKRE EVIGNNIDML IPRDLRPAHP EYIRHNREGG KARVEGMSRE LQLEKKDGSK IWTRFALSKV SAEGKVYYLA LVRDASVEMA QKEQTRQLII AVDHLDRPVI VLDPERHIVQ CNRAFTEMFG YCISEASGMQ PDTLLNIPEF PADNRIRLQQ LLWKTARDQD EFLLLTRTGE KIWIKASISP VYDVLAHLQN LVMTFSDITE ERQIRQLEGN ILAAMCSSPP FHEMGEIICR NIESVLNESH VSLFALRNGM PIHWASSSHG AEIQNAQSWS ATIRQRDGAP AGILQIKTSS GAETSAFIER VADISQHMAA LALEQEKSRQ HIEQLIQFDP MTGLPNRNNL HNYLDDLVDK AVSPVVYLIG VDHIQDVIDS LGYAWADQAL LEVVNRFREK LKPDQYLCRI EGTQFVLVSL ENDVSNITQI ADELRNVVSK PIMIDDKPFP LTLSIGISYD VGKNRDYLLS TAHNAMDYIR KNGGNGWQFF SPAMNEMVKE RLFLGAALKE AISNNQLKLV YQPQIFAETG ELYGIEALAR WHDPLHGHVP PSRFIPLAEE IGEIENIGRW VIAEACRQLA EWRSQNIHIP ALSVNLSALH FRSNQLPNQV SDAMQAWGID GHQLTVEITE SMMMEHDTEI FKRIQILRDM GVGLSVDDFG TGFSGLSRLV SLPVTEIKID KSFVDRCLTE KRILALLEAI TSIGQSLNLT VVAEGVETKE QFEMLRKIHC RVIQGYFFSR PLPAEEIPGW MSSVLPLKI
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