| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2148 |
|---|
| Symbol | |
|---|
| ID | 6066806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 2345781 |
|---|
| End bp | 2351201 |
|---|
| Gene Length | 5421 bp |
|---|
| Protein Length | 1806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641601556 |
|---|
| Product | putative lipoprotein/autotransporter domain-containing protein |
|---|
| Protein accession | YP_001725115 |
|---|
| Protein GI | 170020161 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.589392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGAA TCTATCGCGT GATATGGAAT TGCACCCTAC AGGTATTTCA GGCCTGCTCG
GAATTAACTC GCAGGGTAGG TAAAACATCA ACGGTTAATT TGCGTAAATC CTCTGGACTG
ACAACGAAAT TCAGTAGATT GACGCTGGGT GTTTTGCTGG CACTAAGCGG TTCAGCGTCT
GGTGCGAGTC TGGAAGTTGA TAATGGTCAG ATTACCAATA TTGATACTGA TGTTGCTTAT
GATGCCTACC TGGTTGGCTG GTATGGCACT GGAGTTCTTA ATATTTTGGC TGACGGTAAT
GCCTCCTTAA CCACTATTAC TACCAGCGTC ATTGGCGCTA ATGAGGATTC GGAGGGTACC
GTTAATGTTT TGGGTGGCAC CTGGCGATTG TATGATAGCG GAAATAATGC AAGGCCTTTA
AATGTGGGTC AATCCGGAAC GGGGACGCTG AATATTAAAC AGAAGGGTCA CGTCGATGGA
GGCTATTTAA GATTAGGTTC TTCGACAGGA GGCGTCGGGA CGGTCAATGT TGAGGGAGAG
GACTCTGTTC TGACGACCGA ATTATTCGAA ATAGGGAGTT ACGGTACGGG CTCATTAAAT
ATTACGGATA AGGGTTACGT CACGAGTTCA ATCGTCGCCA TTTTAGGATA TCAAGCGAAC
AGTAATGGTA AGGTTATCGT TGAAAAGGGT GGCGAGTGGC TAATAAAAAA TAATGATTCC
TCAATTGAAT TTCAAATTGG TAATCAAGGA GCTGGGGAGG CGACTATTCG CGAGGGTGGG
CTGATTACGG CTGAAAACAC GATTATCGGT GGCAATGCCA CCGGTTTCGG AACCCTGAAT
GTGCAGGATC AAGACTCTGT CATCACGGTA CGCAGACTCT ATAATGGATA TTTCGGCAAT
GGCACAGTCA ATATTTCCAA TAATGGACTG ATTAATAACA AAGAATATTC ATTGGTGGGC
GTTCAGGACG GTTCCCACGG TGTCGTCAAC GTGACCGATA AAGGGCATTG GAATTTCCTC
GGAACGGGCG AAGCTTTCCG CTATATCTAT ATCGGTGATG CTGGCGATGG TGAACTTAAT
GTCTCGAGTG AAGGCAAAGT AGATTCGGGA ATTATCACTG CGGGGATGAA AGAAACAGGC
ACAGGCAACA TTACTGTTAA GGATAAGAAC TCCGTTATCA CTAATCTCGG AACTAATCTT
GGTTATGACG GCCACGGCGA AATGGATATC AGTAATGAGG GGCTTGTTGT CAGCAACGGA
GGAAGCTCAC TCGGTTATGG AGAAACCGGC GTCGGGAATG TCAGCATCAC CACGGGGGGG
ATGTGGGAGG TCAATAAGAA TGTCTATACC ACCATTGGTG TTGCGGGCGT CGGAAACCTC
AATATTAGCG ATGGCGGTAA GTTCGTATCG CAAAATATTA CTTTTTTGGG CGATAAAGCA
AGCGGTATCG GCACACTGAA CCTGATGGAT GCGACATCAT CGTTCGATAC TGTGGGTATC
AATGTCGGTA ATTTTGGTAG CGGTATCGTA AATGTCAGTA ATGGTGCCAC CCTTAATTCA
ACGGGCTATG GATTTATCGG AGGAAATGCC TCCGGTAAGG GGATAGTTAA TATTTCAACG
GACAGTCTCT GGAATTTAAA GACATCATCT ACTAACGCAC AATTGCTACA GGTCGGTGTA
TTAGGCACGG GTGAACTGAA TATTACCACC GGAGGTATAG TTAAAGCGCG TGATACACAG
ATAGCTCTCA ATGACAAAAG TAAGGGCGAC GTGAGGGTGG ATGGGCAGAA CTCTCTTCTT
GAAACATTCA ATATGTACGT AGGGACATCT GGTACGGGTA CGTTAACCCT GACGAATAAC
GGTACGCTGA ATGTCGAAGG TGGAGAAGTT TACTTAGGTG TTTTTGAGCC TGCTGTAGGA
ACGCTAAACA TTGGTGCTGC TCACGGTGAG GCGGCGGCAG ATGCCGGATT TATCACCAAT
GCGACGAAAG TGGAGTTTGG TCTTGGCGAA GGCGTTTTTG TCTTTAATCA TACCAATAAC
AGTGATGCCG GCTACCAGGT CGATATGCTG ATTACAGGTG ACGATAAAGA CGGAAAAGTG
ATCCATGATG CAGGCCATAC GGTGTTCAAT GCAGGGAATA CTTATAGCGG TAAAACGCTG
GTCAATGACG GCCTCCTGAC CATTGCGTCT CATACGGCAG ATGGGGTAAC GGGCATGGGG
TCGAGTGAAG TAACCATTGC AAACCCCGGT ACGCTCGACA TTCTCGCATC AACGAACAGT
GCAGGAGATT ACACGCTGAC CAATGCGCTC AAAGGCGATG GCTTGATGCG AGTGCAGCTG
TCATCCTCCG ACAAGATGTT TGGCTTTACC CATGCAACAG GGACTGAATT CGCCGGTGTT
GCCCAACTGA AAGACAGTAC CTTCACTCTG GAACGCGACA ACACCGCTGC GCTTACTCAC
GCGATGTTGC AGTCTGACAG TGAAAATACC ACATCGGTAA AAGTTGGAGA GCAATCCATT
GGTGGACTGG CCATGAATGG CGGTACGCTC ATTTTCGATA CGGATATTCC TGCTGCGACG
CTTGCAGAGG GATATATCAG CGTCGATACG CTGGTTGTCG GCGCGGGTGA CTACACCTGG
AAAGGCCGTA ACTATCAGGT AAACGGGACG GGCGACGTGC TTATCGACGT GCCTAAACCG
TGGAATGATC CCATGGCGAA TAACCCTCTG ACGACGCTCA ATTTGCTGGA ACACGACGAT
AGCCATGTCG GCGTTCAACT GGTGAAGGCG CAAACGGTTA TTGGGTCGGG TGGCTCATTA
ACGTTACGTG ATTTACAGGG CGACGAGGTG GAAGCGGACA AAACGTTACA CATTGCGCAA
AACGGAACGG TGGTCGCCGA GGGTGATTAT GGATTCCGCC TCACGACCGC ACCAGGTGAT
GGTTTGTACG TTAACTATGG GCTGAAAGCG CTGAACATCC ATGGTGGGCA AAAGCTGACG
TTAGCCGAAC ATGGCGGAGC CTATGGCGCA ACGGCCGATA TGTCGGCAAA AATCGGTGGT
GAAGGGGATC TGGCAATCAA TACGGTGCGA CAGGTTTCGC TTTCCAACGG TCAGAACGAC
TATCAGGGGG CAACCTACGT TCAGATGGGG ACATTACGTA CCGATGCGGA TGGTGCACTT
GGCAACACCC GGGAACTGAA CATCAGCAAC GCGGCCATCG TCGATCTTAA TGGATCGACG
CAGACGGTAG AGACATTCAC CGGGCAGATG GGTTCGACTG TTTTGTTCAA AGAGGGGGCG
CTGACGGTAA ATAAAGGTGG GATCAGTCAG GGTGAACTGA CAGGTGGCGG AAACCTGAAT
GTTACAGGGG GAACGCTGGC TATCGAGGGG CTTAATGCAC GCTACAATGC GTTAACCAGC
ATTAGCCCAA ATGCGGAAGT CAGCCTCGAT AATACTCAGG GGTTAGGCAG AGGAAATATT
GCCAATGACG GTCTGTTAAC GCTAAAAAAC GTGACTGGCG AACTGCGTAA TAGCATAAGC
GGGAAGGGTA TCGTGAGCGC AACCGCCAGG ACAGATGTAG AGCTGGATGG CGATAATAGC
CGCTTTGTGG GGCAATTCAA CATTGATACA GGCAGCGCGC TCAGCGTCAA CGAGCAGAAA
AACCTGGGTG ATGCTTCCGT TATCAATAAT GGCCTGCTCA CCATCTCCAC TGAGCGTAGC
TGGGCGATGA CGCACAGTAT CAGCGGTAGC GGTGATGTGA CAAAACTGGG TACCGGGATC
CTGACTCTTA ACAACGATTC CGCGGCGTAT CAGGGTACGA CGGATATCGT GGGGGGGGAA
ATTGCTTTCG GTTCCGACTC TGCCATTAAT ATGGCAAGTC AACACATTAA TATCCATAAC
AGCGGTGTGA TGTCGGGAAA TGTCACCACT GCAGGTGATG TGAACGTTAT GCCTGGGGGG
ACACTGCGTG TCGCTAAAAC CACAATCGGC GGCAACCTGG AGAATGGCGG CACGGTTCAA
ATGAATAGCG AAGGGGGGAA ACCGGGGAAT GTACTGACCG TTAACGGCAA CTATACCGGA
AACAATGGCC TGATGACGTT CAACGCGACG CTGGGCGGCG ATAATTCGCC CACCGATAAA
ATGAACGTGA AAGGCGATAC CCAAGGGAAC ACTCGCGTTC GGGTTGATAA CATTGGCGGC
GTCGGTGCAC AAACGGTCAA CGGTATTGAA CTCATTGAGG TTGGCGGTAA TTCTGCAGGT
AACTTCGCGC TGACCACCGG AACTGTCGAA GCTGGGGCTT ACGTCTACAC GCTGGCTAAA
GGGAAGGGGA ATGACGAGAA AAACTGGTAT CTGACCAGTA AATGGGACGG CGTAACGCCA
CCGGATACGC CCGACCCCAT CAATAATCCC CCTGTTGTGG ATCCGGAAGG CCCATCAGTT
TATCGCCCGG AGGCCGGAAG CTATATCAGC AACATTGCCG CAGCCAACTC GCTGTTTAGC
CATCGTTTAC ACGACCGTCT GGGTGAGCCG CAGTATATAG ATTCACTGCA TTCTCAGGGG
TCGGCAAGCA GTATGTGGAT GCGTCATGTC GGAGGGCACG AACGTTCAAG GGCCGGTGAC
GGTCAGCTAA ATACTCAGGC TAACCGCTAT GTATTGCAGC TAGGCGGCGA TTTGGCGCAG
TGGAGTAGCA ACGCGCAGGA TCGCTGGCAT CTTGGCGTGA TGGCAGGCTA CGCCAATCAG
CACAGTAATA CTCAGAGTAA TCGTGTGGGT TATAAATCGG ATGGGCGCAT CAGCGGTTAC
AGCGCTGGGC TGTACGCGAC CTGGTATCAG AACGATGCGA ATAAGACCGG CGCTTATGTT
GACAGCTGGG CGCTGTATAA CTGGTTTGAT AACAGCGTCA GTTCCGATAA CCGTTCTGCT
GACGACTATG ATTCTCGCGG TGTGACGGCC TCTGTTGAGG GTGGGTATAC CTTTGAAGCG
GGAACATTTA GCGGCAGCGA AGGGACGCTG AATACCTGGT ACGTCCAGCC ACAGGCGCAA
ATCACCTGGA TGGGTGTGAA AGATTCCGAC CATACCCGGA AAGACGGAAC GCGCATTGAA
ACGGAAGGCG ACGGAAATGT GCAAACGCGA CTTGGGGTGA AAACCTACCT GAACAGCCAT
CACCAGCGTG ACGATGGTAA ACAGCGTGAG TTCCAGCCTT ACATTGAAGC GAATTGGATC
AACAACAGCA AAGTCTACGC CGTGAAGATG AATGGTCAAA CCGTAGGCCG TGAAGGTGCG
CGTAATCTCG GTGAAGTACG TACCGGGGTT GAGGCGAAAG TAAATAACAA CCTTAGCCTG
TGGGGGAATG TCGGTGTGCA ACTAGGTGAT AAAGGCTATA GCGATACTCA GGGCATGCTG
GGAGTGAAAT ATAGCTGGTA A
|
|---|
| Protein sequence | MNRIYRVIWN CTLQVFQACS ELTRRVGKTS TVNLRKSSGL TTKFSRLTLG VLLALSGSAS
GASLEVDNGQ ITNIDTDVAY DAYLVGWYGT GVLNILADGN ASLTTITTSV IGANEDSEGT
VNVLGGTWRL YDSGNNARPL NVGQSGTGTL NIKQKGHVDG GYLRLGSSTG GVGTVNVEGE
DSVLTTELFE IGSYGTGSLN ITDKGYVTSS IVAILGYQAN SNGKVIVEKG GEWLIKNNDS
SIEFQIGNQG AGEATIREGG LITAENTIIG GNATGFGTLN VQDQDSVITV RRLYNGYFGN
GTVNISNNGL INNKEYSLVG VQDGSHGVVN VTDKGHWNFL GTGEAFRYIY IGDAGDGELN
VSSEGKVDSG IITAGMKETG TGNITVKDKN SVITNLGTNL GYDGHGEMDI SNEGLVVSNG
GSSLGYGETG VGNVSITTGG MWEVNKNVYT TIGVAGVGNL NISDGGKFVS QNITFLGDKA
SGIGTLNLMD ATSSFDTVGI NVGNFGSGIV NVSNGATLNS TGYGFIGGNA SGKGIVNIST
DSLWNLKTSS TNAQLLQVGV LGTGELNITT GGIVKARDTQ IALNDKSKGD VRVDGQNSLL
ETFNMYVGTS GTGTLTLTNN GTLNVEGGEV YLGVFEPAVG TLNIGAAHGE AAADAGFITN
ATKVEFGLGE GVFVFNHTNN SDAGYQVDML ITGDDKDGKV IHDAGHTVFN AGNTYSGKTL
VNDGLLTIAS HTADGVTGMG SSEVTIANPG TLDILASTNS AGDYTLTNAL KGDGLMRVQL
SSSDKMFGFT HATGTEFAGV AQLKDSTFTL ERDNTAALTH AMLQSDSENT TSVKVGEQSI
GGLAMNGGTL IFDTDIPAAT LAEGYISVDT LVVGAGDYTW KGRNYQVNGT GDVLIDVPKP
WNDPMANNPL TTLNLLEHDD SHVGVQLVKA QTVIGSGGSL TLRDLQGDEV EADKTLHIAQ
NGTVVAEGDY GFRLTTAPGD GLYVNYGLKA LNIHGGQKLT LAEHGGAYGA TADMSAKIGG
EGDLAINTVR QVSLSNGQND YQGATYVQMG TLRTDADGAL GNTRELNISN AAIVDLNGST
QTVETFTGQM GSTVLFKEGA LTVNKGGISQ GELTGGGNLN VTGGTLAIEG LNARYNALTS
ISPNAEVSLD NTQGLGRGNI ANDGLLTLKN VTGELRNSIS GKGIVSATAR TDVELDGDNS
RFVGQFNIDT GSALSVNEQK NLGDASVINN GLLTISTERS WAMTHSISGS GDVTKLGTGI
LTLNNDSAAY QGTTDIVGGE IAFGSDSAIN MASQHINIHN SGVMSGNVTT AGDVNVMPGG
TLRVAKTTIG GNLENGGTVQ MNSEGGKPGN VLTVNGNYTG NNGLMTFNAT LGGDNSPTDK
MNVKGDTQGN TRVRVDNIGG VGAQTVNGIE LIEVGGNSAG NFALTTGTVE AGAYVYTLAK
GKGNDEKNWY LTSKWDGVTP PDTPDPINNP PVVDPEGPSV YRPEAGSYIS NIAAANSLFS
HRLHDRLGEP QYIDSLHSQG SASSMWMRHV GGHERSRAGD GQLNTQANRY VLQLGGDLAQ
WSSNAQDRWH LGVMAGYANQ HSNTQSNRVG YKSDGRISGY SAGLYATWYQ NDANKTGAYV
DSWALYNWFD NSVSSDNRSA DDYDSRGVTA SVEGGYTFEA GTFSGSEGTL NTWYVQPQAQ
ITWMGVKDSD HTRKDGTRIE TEGDGNVQTR LGVKTYLNSH HQRDDGKQRE FQPYIEANWI
NNSKVYAVKM NGQTVGREGA RNLGEVRTGV EAKVNNNLSL WGNVGVQLGD KGYSDTQGML
GVKYSW
|
|---|
| |