| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2052 |
|---|
| Symbol | |
|---|
| ID | 6067742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 2263784 |
|---|
| End bp | 2265079 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641601464 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001725023 |
|---|
| Protein GI | 170020069 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00969136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAAG TTGAAATGAA ATATCCGACA GGCGTGGAAA ACCATGGAGG GAAATTACGT
ATCTGGTTTG TTTATAAAGA CGTAAGAGTC AGGGAAAATC TGGGGGTTCC TGACACAGCA
AAAAACAGGC GCGTTGCAGG TGAACTACGC TCCTCTGTTT GTTACGCAAT AAAAACTGGT
GTTTTCGACT ATGCAAAACA GTTTCCCTCC TCACGCAATC TGGAAAAATT TGGTGAGGCC
CGACAAGATT TAACCATAAA AGAACTGGCT GAAAAATTTC TGGCACTGAA AGAAACTGAA
GTCGCCAAAA CATCACTCAA CACATACCGT GCCGTCATCA AAAATATCCT GAGCATAATC
GGTGAAAAAA ATCTTGCCTC ATCGATTAAT AAAGAAAAAT TACTGGAGGT TCGTAAAGAG
TTACTGACTG GATACCAGAT CCCCAAAAGT AACTATATTG TTACACAACC AGGGAGATCG
GCTGTAACTG TAAATAATTA CATGACAAAT CTTAACGCCG TGTTCCAGTT TGGTGTTGAT
AACGGTTACC TGGCAGATAA TCCGTTTAAG GGGATCTCGC CATTAAAGGA ATCAAGAACC
ATTCCGGATC CTCTTTCGCG GGAAGAATTT ATCCGTCTTA TCGATGCGTG CAGAAATCAG
CAAGCAAAAA ATTTATGGTG TGTTTCTGTT TATACTGGAG TTCGCCCTGG TGAGCTGTGT
GCACTTGGAT GGGAGGACAT AGATCTGAAA AATGGAACAA TGATGATCAG GAGAAATTTA
GCAAAAGACC GTTTCACGGT ACCAAAAACA CAGGCGGGAA CCAATCGGGT CATTCATCTT
ATTAAGCCAG CAATCGACGC TCTCCGGAGT CAGATGACAT TAACGAGACT GAGCAAAGAG
CATATCATTG ATGTTCACCT CAGAGAGTAT GGCAGAACAG AAAAACAAAA ATGCACCTTT
GTTTTTCAAC CTGAAGTGTC AGCGAGAGTA AAAAATTATG GTGACCATTT TACCGTTGAC
TCAATAAGGC AGATGTGGGA CGCAGCGATA AAACGTGCCG GACTCCGCCA TCGAAAATCA
TATCAGTCGA GACATACTTA TGCCTGCTGG TCGCTGACAG CTGGTGCTAA CCCGGCATTT
ATAGCAAACC AGATGGGCCA TGCAGATGCG CAAATGGTAT TTCAGGTATA CGGAAAATGG
ATGTCTGAAA ACAATAATGC ACAGGTAGCT TTGTTAAATA CACAGTTAAG CGAGTATGCC
CCAACCATGC CCCATAACGA AGCAATGAAA AATTAA
|
|---|
| Protein sequence | MREVEMKYPT GVENHGGKLR IWFVYKDVRV RENLGVPDTA KNRRVAGELR SSVCYAIKTG
VFDYAKQFPS SRNLEKFGEA RQDLTIKELA EKFLALKETE VAKTSLNTYR AVIKNILSII
GEKNLASSIN KEKLLEVRKE LLTGYQIPKS NYIVTQPGRS AVTVNNYMTN LNAVFQFGVD
NGYLADNPFK GISPLKESRT IPDPLSREEF IRLIDACRNQ QAKNLWCVSV YTGVRPGELC
ALGWEDIDLK NGTMMIRRNL AKDRFTVPKT QAGTNRVIHL IKPAIDALRS QMTLTRLSKE
HIIDVHLREY GRTEKQKCTF VFQPEVSARV KNYGDHFTVD SIRQMWDAAI KRAGLRHRKS
YQSRHTYACW SLTAGANPAF IANQMGHADA QMVFQVYGKW MSENNNAQVA LLNTQLSEYA
PTMPHNEAMK N
|
|---|
| |