| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2002 |
|---|
| Symbol | |
|---|
| ID | 6068122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 2210327 |
|---|
| End bp | 2210908 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641601416 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit E |
|---|
| Protein accession | YP_001724975 |
|---|
| Protein GI | 170020021 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4657] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA |
|---|
| TIGRFAM ID | [TIGR01943] electron transport complex, RnfABCDGE type, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000896945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.348521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACT ACCTGTTACT GTTTGTCGGA ACTGTACTGG TCAATAACTT TGTACTGGTC
AAGTTTCTCG GTCTCTGTCC GTTTATGGGG GTTTCCAAAA AACTGGAAAC CGCGATGGGC
ATGGGGCTGG CAACAACGTT TGTGATGACG CTGGCGTCTA TTTGCGCCTG GCTTATCGAT
ACGTGGATTT TGATCCCACT TAATCTGATT TACCTGCGCA CCCTGGCATT TATTCTGGTG
ATTGCTGTGG TCGTGCAGTT CACCGAGATG GTGGTGCGCA AAACCAGCCC GGTGCTTTAC
CGTCTGCTGG GGATTTTTTT GCCGCTTATC ACCACCAACT GTGCAGTGCT CGGCGTGGCG
TTGCTGAATA TCAATCTCGG GCACAATTTC TTGCAGTCGG CGCTGTACGG TTTTTCCGCC
GCTGTCGGTT TCTCGCTGGT GATGGTGCTC TTCGCCGCCA TCCGCGAACG CCTTGCTGTG
GCTGATGTCC CGGCACCTTT TCGCGGTAAT GCCATTGCGT TAATTACCGC AGGTCTTATG
TCTCTGGCCT TTATGGGCTT TAGTGGTTTG GTGAAGTTGT AA
|
|---|
| Protein sequence | MTDYLLLFVG TVLVNNFVLV KFLGLCPFMG VSKKLETAMG MGLATTFVMT LASICAWLID
TWILIPLNLI YLRTLAFILV IAVVVQFTEM VVRKTSPVLY RLLGIFLPLI TTNCAVLGVA
LLNINLGHNF LQSALYGFSA AVGFSLVMVL FAAIRERLAV ADVPAPFRGN AIALITAGLM
SLAFMGFSGL VKL
|
|---|
| |