| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1985 |
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| Symbol | |
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| ID | 6068174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 2194554 |
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| End bp | 2195411 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641601399 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001724958 |
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| Protein GI | 170020004 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.172504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00138161 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAATTA AAACAATTAA GTATTTCTCA ACAATCATTG TAGCGGTAGT TGCGGTTCTT
GCCGGATGGT GGCTGTGGAA TTATTACATG CAATCTCCGT GGACACGCGA CGGGAAAATA
CGCGCAGAAC AGGTTTCTAT CACCCCACAG GTGTCGGGAC GTATTGTTGA GCTGAATATA
AAAGACAACC AGCTGGTTAA CGCGGGGGAT CTTCTGCTCA CGATCGATAA AACGCCCTTT
CAGATCGCCG AGCTGAACGC ACAGGCTCAG CTGGCGAAAG CGCAATCTGA CCTCGCAAAA
GCCAATAACG AAGCGAATCG TCGTCGTCAT CTCTCACAAA ATTTTATTTC TGCCGAAGAA
CTCGATACCG CTAACCTCAA TGTTAAAGCG ATGCAGGCCA GTGTTGATGC CGCACAGGCG
ACGCTGAAAC AGGCACAATG GCAACTGGCG CAAACGGAAA TTCGCGCCCC GGTGAGTGGA
TGGGTGACTA ACCTTACTAC CCGCATCGGC GATTACGCTG ATACCGGGAA ACCGCTGTTT
GCCCTTGTCG ACAGCCACTC GTTTTACGTC ATTGGTTATT TTGAAGAAAC CAAGTTGCGC
CATATCCGCG AAGGTGCACC AGCACAAATT ACCCTCTATA GTGATAACAA AACGTTACAG
GGTCACGTTT CCAGTATCGG TCGGGCGATT TATGATCAGA GCGTTGAAAG TGACTCAAGC
CTTATTCCGG ATGTTAAACC TAACGTCCCC TGGGTTCGAC TCGCCCAACG CGTTCCCGTC
CGCTTTGCGC TGGATAAAGT CCCAGGCGAT GTCACGTTGG TGTCGGGCAC CACCTGTAGC
ATTGCCGTAG GTCAATAA
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| Protein sequence | MSIKTIKYFS TIIVAVVAVL AGWWLWNYYM QSPWTRDGKI RAEQVSITPQ VSGRIVELNI
KDNQLVNAGD LLLTIDKTPF QIAELNAQAQ LAKAQSDLAK ANNEANRRRH LSQNFISAEE
LDTANLNVKA MQASVDAAQA TLKQAQWQLA QTEIRAPVSG WVTNLTTRIG DYADTGKPLF
ALVDSHSFYV IGYFEETKLR HIREGAPAQI TLYSDNKTLQ GHVSSIGRAI YDQSVESDSS
LIPDVKPNVP WVRLAQRVPV RFALDKVPGD VTLVSGTTCS IAVGQ
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