| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1976 |
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| Symbol | |
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| ID | 6068201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 2182972 |
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| End bp | 2187588 |
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| Gene Length | 4617 bp |
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| Protein Length | 1538 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641601390 |
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| Product | putative ATP-dependent helicase Lhr |
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| Protein accession | YP_001724949 |
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| Protein GI | 170019995 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.987163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00398653 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGATA ATCCAGACCC TTCATCGCTC CTGCCGGACG TGTTTTCACC GGCGACCCGC
GACTGGTTTC TTCGCGCCTT TAAACAGCCG ACCGCTGTCC AGCCGCAAAC CTGGCATGTG
GCGGCGCGAA GCGAACATGC GCTGGTGATT GCACCGACCG GCTCCGGGAA AACGCTGGCA
GCATTTCTCT ACGCCCTCGA TCGGCTCTTC CGCGAAGGCG GCGAAGATAC CCGCGAGGCG
CATAAGCGTA AAACCTCACG CATCCTCTAT ATTTCACCGA TAAAAGCCCT GGGCACCGAC
GTTCAGCGCA ACTTGCAGAT CCCGTTGAAG GGTATTGCCG ATGAACGGCG GCGGCGCGGC
GAAACGGAAG TCAATCTTCG CGTAGGGATC CGTACTGGCG ATACGCCTGC ACAGGAACGC
AGCAAACTCA CCCGTAATCC GCCGGATATT CTGATCACCA CACCCGAATC ACTCTATCTG
ATGCTGACCT CCCGCGCGCG CGAAACGCTA CGCGGCGTCG AAACGGTAAT TATTGATGAA
GTCCACGCGG TAGCGGGCAG TAAACGTGGT GCGCATCTGG CGTTAAGTCT GGAGCGGCTC
GATGCGCTGC TCCACACCTC AGCACAGCGA ATTGGCCTTT CTGCCACTGT GCGCTCAGCC
AGCGATGTGG CAGCATTTCT TGGTGGCGAT CGCCCGGTTA CGGTAGTCAA CCCGCCCGCA
ATGCGCCATC CGCAGATACG AATTGTCGTA CCGGTCGCCA ATATGGATGA TGTCTCATCG
GTCGCCAGCG GCACCGGCGA AGACAGCCAT GCCGGCCGGG AAGGCTCCAT CTGGCCATAT
ATTGAAACGG GTATCCTTGA TGAAGTGTTG CGCCATCGCT CGACCATTGT CTTTACTAAT
TCACGCGGGC TGGCGGAAAA ACTGACGGCA CGATTAAATG AGCTTTACGC CGCACGCTTA
CAGCGTTCCC CGTCTATCGC CGTTGATGCG GCCCATTTCG AGTCGACCTC CGGCGCAACC
TCTAACCGTG TACAAAGTAG CGACGTTTTT ATTGCCCGCT CACACCACGG CTCCGTCTCT
AAAGAACAAC GAGCAATCAC CGAACAGGCG CTGAAATCGG GTGAATTACG CTGCGTGGTC
GCAACCTCCA GTCTTGAACT GGGGATTGAT ATGGGCGCGG TGGATCTGGT GATTCAGGTG
GCAACGCCGC TTTCTGTTGC CAGTGGGTTA CAACGCATTG GTCGCGCCGG ACATCAGGTT
GGCGGTGTAT CTAAAGGGCT GTTTTTCCCC CGTACCCGGC GTGATTTAGT CGATTCCGCA
GTCATTGTAG AGTGTATGTT CGCAGGCAGG CTGGAAAACC TGACACCACC GCATAATCCT
CTCGACGTCC TTGCGCAGCA AACCGTTGCC GCCGCGGCGA TGGATGCATT ACAGGTAGAC
GAATGGTACT CCCGCGTACG CCGTGCCGCA CCGTGGAAAG ATCTGCCAAG ACGTGTTTTT
GACGCCACGC TGGATATGCT TTCCGGGCGC TATCCCTCTG GCGATTTTTC TGCTTTTCGC
CCCAAACTGG TCTGGAACAG GGAGACCGGG ATATTGACCG CCCGACCTGG CGCTCAATTG
TTGGCGGTTA CCAGCGGCGG CACCATTCCG GATCGTGGCA TGTATAGCGT GTTATTACCC
GAAGGTGAAG AAAAGGCCGG TTCGCGGCGG GTGGGTGAAC TGGATGAGGA GATGGTATAT
GAGTCGCGGG TGAACGACAT TATCACTCTC GGCGCTACCT CATGGCGGAT CCAGCAAATC
ACCCGCGATC AGGTGATTGT GACTCCTGCT CCGGGTCGTT CTGCCCGGCT CCCCTTCTGG
CGTGGTGAAG GTAACGGACG TCCGGCTGAA TTAGGCGAGA TGATCGGCGA TTTTCTTCAT
TTGCTGGCGG ATGGCGCGTT CTTTTCCGGG ACTATTCCCC CGTGGCTGGC AGAAGAAAAT
ACGATCGCCA ATATTCAGGG GTTGATTGAG GAGCAGCGCA ACGCGACGGG CATCGTTCCG
GGGAGTCGCC ATCTGGTCCT CGAACGGTGC CGTGATGAAA TTGGTGACTG GCGTATTATT
TTGCACTCTC CCTATGGAAG ACGGGTGCAT GAACCCTGGG CGCTGGCGAT TGCCGGGCGA
ATACATGCGC TATGGGGCGC TGACGCGTCG GTGGTCGCCA GTGATGACGG CATTGTTGCA
CGTATTCCTG ACACCGATGG TAAATTGCCC GATGCCGCGA TTTTTTTGTT TGAACCAGAA
AAGTTGCTGC AAATTGTCCG CGAGGCGGTA GGCAGCTCGG CACTTTTCGC CGCCCGTTTT
CGCGAATGCG CCGCGCGGGC ATTATTAATG CCGGGGCGCA CTCCGGGCCA TCGCACCCCG
CTTTGGCAAC AACGGCTGCG CGCCAGTCAG TTGCTGGAAA TCGCTCAGGG ATATCCGGAT
TTTCCGGTCA TTCTCGAAAC CCTACGCGAA TGTCTGCAAG ATGTTTATGA TCTTCCCGCA
CTGGAACGTT TGATGCGTCG CCTGAACGGT GGCGAAATTC AAATATCCGA TGTAACGACC
ACTACGCCCT CGCCTTTCGC CACAAGTTTA TTGTTCGGCT ATGTCGCGGA ATTTATGTAC
CAGAGCGACG CCCCGCTGGC AGAGCGCCGG GCATCCGTAC TGTCGCTGGA CAGCGAGTTA
CTGCGCAATC TACTCGGACA GGTCGATCCG GGGGAATTAC TCGACCCGCA GGTCATTCGC
CAGGTGGAAG AAGAGTTGCA ACGACTGGCT CCTGGCAGAA GAGCGAAAGG TGAAGAAGGA
TTGTTCGACC TGCTGCGCGA ACTGGGGCCA ATGACCGTTG AAGACCTGGC GCAACGGCAT
ACAGGCAGCA GTGAAGAGGT TGCGTCGTAT CTGGAAAATC TTCTTGCAGT AAAACGAATC
TTCCCAGCGA TGATTAGCGG ACAGGAGCGT CTTGCCTGTA TGGATGATGC CGCCAGGCTG
CGTGATGCCC TCGGCGTACG ACTACCAGAG TCATTGCCAG AGATTTATTT ACATAGAGTC
AGTTACCCGC TTCGCGACCT CTTTCTGCGC TATCTCCGGG CTCATGCTCT GGTCACGGCT
GAACAACTGG CTCATGAGTT TAGTCTCGGT ATTGCCATTG TCGAAGAGCA GCTTCAGCAA
CTGCGTGAAC AGGGTCTGGT GATGAATCTG CAACAAGACA TCTGGGTGAG CGATGAAGTA
TTTCGTCGTC TGCGTTTGCG CTCGCTGCAA GCCGCCAGAG AAGCGACGCG TCCCGTTGCA
GCCACGACCT ATGCGCGATT GCTGCTGGAA CGTCAGGGCG TATTACCCGC CACCGATGGT
AGCCCGGCGC TCTTTGCCTC AACATCGCCA GGCGTTTATG AGGGCGTAGA TGGCGTGATG
CGGGTGATCG AACAGCTTGC CGGAGTCGGT TTACCCGCCT CACTCTGGGA AAGCCAGATC
CTGCCTGCCC GCGTACGCGA CTATTCGTCA GAAATGCTCG ATGAATTACT GGCAACCGGT
GCGGTTATCT GGTCGGGGCA AAAAAAACTG GGTGAAGATG ACGGCCTGGT GGCACTGCAT
CTACAGGAAT ATGCTGCAGA ATCGTTCACT CCCGCCGAAG CGGATCAGGC GAATCGTTCG
GCGCTGCAAC AAGCGATAGT CGCTGTTCTG GCTGACGGAG GAGCCTGGTT TGCACAACAA
ATCAGCCAAC GGATACGCGA CAAAATCGGC GAATCGGTTG ATCTCTCTGC CCTGCAAGAG
GCGTTATGGG CGCTGGTCTG GCAAGGCGTC ATCACCAGCA ACATTTGGGC ACCGTTACGC
GCCCTCACCC GCAGCAGTTC CAACGCACGC ACCTCAACTC GCCGCAGTCA CCGGGCTCGT
CGTGGACGTC CTGTCTATGC GCAACCCGTC TCGCCGCGGG TATCTTACAA CACACCAAAT
CTGGCTGGAC GCTGGTCGTT ATTGCAGGTG GAGCCACTAA ACGATACCGA AAGGATGCTG
GCGCTGGCGG AAAATATGCT CGACCGCTAC GGCATCATCA GTCGTCAGGC GGTGATAGCC
GAAAATATCC CTGGCGGGTT TCCATCGATG CAAACGCTTT GTCGAAGTAT GGAAGACTCC
GGGCGAATTA TGCGAGGTCG TTTTGTAGAA GGTCTGGGTG GCGCGCAATT CGCTGAACGT
CTGACTATTG ACCGATTGCG CGATCTGGCG ACACAAGCCA CGCAAACGCG CCACTATACA
CCAGTGGCGC TCTCTGCCAA CGATCCGGCT AATGTGTGGG GAAATCTTCT GCCCTGGCCT
GCACATCCGG CAACGCTGGT TCCAACGCGT CGGGCGGGTG CGCTGGTGGT CGTTTCTGGC
GGCAAATTGT TACTCTATCT GGCGCAAGGT GGCAAAAAAA TGCTGGTCTG GCAGGAAAAA
GAGGAATTAC TCGCCCCAGA GGTTTTCCAC GCGCTGACTA CCGCACTGCG TCGCGAACCA
CGGCTGCGCT TTACGCTAAC AGAAGTGAAT GATCTACCGG TCCGGCAAAC GCCGATGTTT
ACACTGCTGC GTGAGGCGGG ATTTTCAAGT TCGCCACAAG GGCTGGATTT GGGATAG
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| Protein sequence | MADNPDPSSL LPDVFSPATR DWFLRAFKQP TAVQPQTWHV AARSEHALVI APTGSGKTLA
AFLYALDRLF REGGEDTREA HKRKTSRILY ISPIKALGTD VQRNLQIPLK GIADERRRRG
ETEVNLRVGI RTGDTPAQER SKLTRNPPDI LITTPESLYL MLTSRARETL RGVETVIIDE
VHAVAGSKRG AHLALSLERL DALLHTSAQR IGLSATVRSA SDVAAFLGGD RPVTVVNPPA
MRHPQIRIVV PVANMDDVSS VASGTGEDSH AGREGSIWPY IETGILDEVL RHRSTIVFTN
SRGLAEKLTA RLNELYAARL QRSPSIAVDA AHFESTSGAT SNRVQSSDVF IARSHHGSVS
KEQRAITEQA LKSGELRCVV ATSSLELGID MGAVDLVIQV ATPLSVASGL QRIGRAGHQV
GGVSKGLFFP RTRRDLVDSA VIVECMFAGR LENLTPPHNP LDVLAQQTVA AAAMDALQVD
EWYSRVRRAA PWKDLPRRVF DATLDMLSGR YPSGDFSAFR PKLVWNRETG ILTARPGAQL
LAVTSGGTIP DRGMYSVLLP EGEEKAGSRR VGELDEEMVY ESRVNDIITL GATSWRIQQI
TRDQVIVTPA PGRSARLPFW RGEGNGRPAE LGEMIGDFLH LLADGAFFSG TIPPWLAEEN
TIANIQGLIE EQRNATGIVP GSRHLVLERC RDEIGDWRII LHSPYGRRVH EPWALAIAGR
IHALWGADAS VVASDDGIVA RIPDTDGKLP DAAIFLFEPE KLLQIVREAV GSSALFAARF
RECAARALLM PGRTPGHRTP LWQQRLRASQ LLEIAQGYPD FPVILETLRE CLQDVYDLPA
LERLMRRLNG GEIQISDVTT TTPSPFATSL LFGYVAEFMY QSDAPLAERR ASVLSLDSEL
LRNLLGQVDP GELLDPQVIR QVEEELQRLA PGRRAKGEEG LFDLLRELGP MTVEDLAQRH
TGSSEEVASY LENLLAVKRI FPAMISGQER LACMDDAARL RDALGVRLPE SLPEIYLHRV
SYPLRDLFLR YLRAHALVTA EQLAHEFSLG IAIVEEQLQQ LREQGLVMNL QQDIWVSDEV
FRRLRLRSLQ AAREATRPVA ATTYARLLLE RQGVLPATDG SPALFASTSP GVYEGVDGVM
RVIEQLAGVG LPASLWESQI LPARVRDYSS EMLDELLATG AVIWSGQKKL GEDDGLVALH
LQEYAAESFT PAEADQANRS ALQQAIVAVL ADGGAWFAQQ ISQRIRDKIG ESVDLSALQE
ALWALVWQGV ITSNIWAPLR ALTRSSSNAR TSTRRSHRAR RGRPVYAQPV SPRVSYNTPN
LAGRWSLLQV EPLNDTERML ALAENMLDRY GIISRQAVIA ENIPGGFPSM QTLCRSMEDS
GRIMRGRFVE GLGGAQFAER LTIDRLRDLA TQATQTRHYT PVALSANDPA NVWGNLLPWP
AHPATLVPTR RAGALVVVSG GKLLLYLAQG GKKMLVWQEK EELLAPEVFH ALTTALRREP
RLRFTLTEVN DLPVRQTPMF TLLREAGFSS SPQGLDLG
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