Gene EcolC_1974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1974 
Symbol 
ID6068208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp2181425 
End bp2182240 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content48% 
IMG OID641601388 
ProductNLP/P60 protein 
Protein accessionYP_001724947 
Protein GI170019993 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00117191 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCGCGGA TAAACCGTAT TTCGATCACG CTCTGTGCTT TACTTTTTAC CACCCTGCCT 
TTAACGCCTA TGGCCCATGC TTCAAAGCAA GCCAGGGAGA GTTCTGCTAC CACTCATATC
ACCAAAAAAG CAGATAAAAA GAAAAGCACG GCAACCACCA AAAAGACCCA GAAAACAGCG
AAAAAAGCCG CCAGTAAAAG TACGACCAAA AGCAAAACCG CTTCTTCCGT TAAAAAATCT
TCCATTACCG CTTCTAAAAA CGCCAAAACT CGCAGCAAAC ACGCCGTCAA TAAAACGGCC
TCAGCCAGCT TTACCGAAAA GTGTACCAAA CGTAAGGGCT ATAAATCGCA TTGTGTGAAA
GTCAAAAATG CCGCGTCAGG AACTCTTGCC GACGCGCACA AAGCGAAGGT GCAAAAAGCT
ACGAAAGTGG CAATGAATAA ACTGATGCAG CAAATTGGTA AGCCATATCG TTGGGGTGGC
AGCTCACCGC GTACCGGTTT TGATTGCAGC GGCCTGGTTT ATTACGCTTA TAAAGATTTG
GTGAAAATTC GTATTCCGCG TACGGCGAAT GAAATGTATC ACCTGCGTGA TGCAGCGCCA
ATCGAACGTA GTGAACTGAA AAACGGCGAC CTGGTCTTTT TCCGTACTCA GGGACGCGGC
ACAGCCGATC ATGTCGGCGT GTATGTCGGC AACGGCAAAT TTATTCAGTC ACCGCGCACA
GGTCAGGAAA TTCAAATCAC TTCTCTCAGT GAAGACTACT GGCAGCGCCA CTATGTTGGC
GCTCGTCGGG TAATGACCCC AAAAACACTT CGCTAA
 
Protein sequence
MARINRISIT LCALLFTTLP LTPMAHASKQ ARESSATTHI TKKADKKKST ATTKKTQKTA 
KKAASKSTTK SKTASSVKKS SITASKNAKT RSKHAVNKTA SASFTEKCTK RKGYKSHCVK
VKNAASGTLA DAHKAKVQKA TKVAMNKLMQ QIGKPYRWGG SSPRTGFDCS GLVYYAYKDL
VKIRIPRTAN EMYHLRDAAP IERSELKNGD LVFFRTQGRG TADHVGVYVG NGKFIQSPRT
GQEIQITSLS EDYWQRHYVG ARRVMTPKTL R