Gene EcolC_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1960 
Symbol 
ID6068339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp2165678 
End bp2166346 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content50% 
IMG OID641601372 
Product4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 
Protein accessionYP_001724933 
Protein GI170019979 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.604872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000176018 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCTTCA CTCGACGCAA ATTTGTTCTG GGGATGGGAA CAGTAATCTT TTTTACTGGT 
TCTGCGTCTT CTCTGTTAGC GAACACGAGG CAAGAAAAGG AAGTTCGGTA TGCCATGATT
CATGACGAGT CACGGTGCAA TGGCTGTAAT ATTTGCGCCC GCGCATGCCG TAAAACTAAC
CACGTCCCCG CTCAGGGAAG CCGTTTATCG ATAGCACACA TTCCAGTCAC CGATAACGAC
AACGAAACGC AGTATCACTT TTTTCGCCAG TCATGTCAGC ACTGCGAAGA TGCTCCGTGC
ATCGACGTAT GCCCGACGGG GGCATCGTGG CGTGATGAGC AGGGGATCGT GCGGGTAGAA
AAATCGCAGT GCATCGGCTG CAGTTATTGC ATTGGCGCTT GTCCGTACCA GGTTCGCTAC
CTTAACCCTG TCACTAAAGT GGCAGATAAA TGTGATTTCT GCGCTGAGTC CCGACTGGCA
AAAGGCTTTC CGCCCATTTG CGTCAGCGCC TGTCCGGAAC ACGCATTGAT CTTTGGTCGC
GAAGATAGCC CAGAAATTCA GGCGTGGTTG CAGGATAATA AATACTATCA ATATCAGCTA
CCTGGTGCCG GGAAACCGCA TCTGTATCGC CGGTTCGGTC AACATTTGAT TAAAAAGGAA
AATGTATGA
 
Protein sequence
MSFTRRKFVL GMGTVIFFTG SASSLLANTR QEKEVRYAMI HDESRCNGCN ICARACRKTN 
HVPAQGSRLS IAHIPVTDND NETQYHFFRQ SCQHCEDAPC IDVCPTGASW RDEQGIVRVE
KSQCIGCSYC IGACPYQVRY LNPVTKVADK CDFCAESRLA KGFPPICVSA CPEHALIFGR
EDSPEIQAWL QDNKYYQYQL PGAGKPHLYR RFGQHLIKKE NV