| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1797 |
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| Symbol | yebU |
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| ID | 6066012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 1994252 |
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| End bp | 1995697 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641601212 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001724774 |
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| Protein GI | 170019820 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.396046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0585336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTCGTGG CCCAACACAC CGTTTATTTC CCGGACGCCT TTCTGACGCA AATGCGCGAA
GCGATGCCTT CGACGCTCTC TTTTGATGAT TTTCTTGCCG CCTGTCAGCG CCCGTTGCGC
CGCAGCATTC GCGTTAATAC GCTGAAAATC TCCGTTGCTG ATTTCCTGCA ATTAACCGCT
CCTTATGGCT GGACGCTTAC GCCAATTCCG TGGTGTGAAG AAGGTTTCTG GATTGAACGC
GACAATGAAG ATGCATTGCC ATTGGGTAGT ACCGCCGAGC ATTTAAGCGG CCTGTTTTAT
ATTCAGGAAG CCAGTTCAAT GTTGCCCGTC GCCGCCTTGT TTGCTGACGG TAATGCACCA
CAGCGGGTGA TGGATGTCGC TGCTGCGCCA GGCTCCAAAA CGACGCAAAT TGCCGCACGG
ATGAATAACG AAGGGGCAAT CCTTGCCAAT GAGTTTTCCG CCAGTCGGGT AAAAGTGTTA
CATGCCAATA TCAGCCGCTG TGGCATCAGT AATGTTGCGC TCACACATTT TGATGGCCGC
GTGTTTGGTG TGGCAGTGCC AGAAATGTTC GATGCCATTT TGCTGGACGC TCCCTGCTCT
GGCGAAGGCG TGGTGCGTAA AGATCCCGAT GCGCTAAAAA ACTGGTCACC AGAAAGCAAT
CAGGAAATCG CAGCTACACA ACGGGAGCTT ATCGACAGCG CCTTTCATGC ATTACGTCCT
GGTGGTACGC TGGTTTACTC GACCTGTACC TTAAACAGGG AAGAAAACGA AGCCGTTTGC
ATGTGGCTGA AAGAGACTTA CCCTGACGCA GTAGAGTTTT TACCACTTGG CGAGCTCTTC
CCTGCTGCAA ACAAAGCGCT GACCGAAGAA GGCTTTTTGC ATGTTTTCCC ACAAATTTAC
GACTGCGAAG GCTTCTTCGT TGCTCGTCTG CGTAAAACTC AGGCCATTCC CGCCTTACCC
GCCCCCAAAT ACAAAGTCGG TAATTTTCCG TTCAGCCCGG TGAAAGATCG CGAAGCTGGA
CAAATTCGTC AGGCGGCTGC AGGTGTTGGC TTAAACTGGG ATGAAAACCT GCGCCTCTGG
CAGCGTGACA AAGAACTGTG GTTGTTCCCG GTGGGCATTG AAGCCCTGAT CGGTAAAGTC
CGATTTTCTC GCTTGGGGAT TAAACTTGCC GAAACGCACA ACAAAGGTTA TCGCTGGCAG
CATGAAGCAG TTATTGCCCT TGCCACCCCC GACAATGTGA ACGCTTTTGA ACTGACACCG
CAGGAAGCGG AGGAGTGGTA TCGCGGGCGC GATGTTTACC CGCAAGCCGC GCCAGTGGCG
GATGACGTGT TGGTTACTTT CCAGCATCAG CCGATTGGTT TAGCCAAACG GATTGGTTCG
CGACTGAAAA ACAGCTACCC GCGTGAACTG GTGCGGGACG GGAAACTTTT TACCAGTAAC
GCATGA
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| Protein sequence | MLVAQHTVYF PDAFLTQMRE AMPSTLSFDD FLAACQRPLR RSIRVNTLKI SVADFLQLTA
PYGWTLTPIP WCEEGFWIER DNEDALPLGS TAEHLSGLFY IQEASSMLPV AALFADGNAP
QRVMDVAAAP GSKTTQIAAR MNNEGAILAN EFSASRVKVL HANISRCGIS NVALTHFDGR
VFGVAVPEMF DAILLDAPCS GEGVVRKDPD ALKNWSPESN QEIAATQREL IDSAFHALRP
GGTLVYSTCT LNREENEAVC MWLKETYPDA VEFLPLGELF PAANKALTEE GFLHVFPQIY
DCEGFFVARL RKTQAIPALP APKYKVGNFP FSPVKDREAG QIRQAAAGVG LNWDENLRLW
QRDKELWLFP VGIEALIGKV RFSRLGIKLA ETHNKGYRWQ HEAVIALATP DNVNAFELTP
QEAEEWYRGR DVYPQAAPVA DDVLVTFQHQ PIGLAKRIGS RLKNSYPREL VRDGKLFTSN
A
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