Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1704 |
Symbol | fliF |
ID | 6064603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1902232 |
End bp | 1903890 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641601118 |
Product | flagellar MS-ring protein |
Protein accession | YP_001724683 |
Protein GI | 170019729 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.120721 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCGA CTGCAGCCCA GACAAAATCT CTTGAGTGGC TTAATCGCCT GCGTGCGAAT CCGAAAATTC CATTGATTGT TGCCGGTTCC GCGGCAGTGG CGGTCATGGT CGCACTGATC CTGTGGGCGA AAGCCCCCGA CTACCGCACA TTATTCAGCA ATCTTTCCGA TCAGGATGGT GGCGCAATTG TCAGCCAACT GACGCAAATG AATATTCCTT ACCGCTTCAG CGAAGCCAGC GGCGCTATTG AAGTTCCGGC AGATAAAGTT CACGAACTGC GTCTGCGCCT GGCACAACAA GGTTTGCCCA AAGGCGGCGC GGTCGGTTTC GAACTACTCG ATCAGGAAAA GTTTGGTATC AGCCAGTTCA GCGAACAGGT GAATTATCAG CGGGCGCTGG AAGGCGAGCT TTCTCGTACC ATCGAAACTA TCGGCCCGGT AAAAGGGGCG CGCGTACATC TGGCAATGCC GAAACCGTCT TTATTCGTCC GTGAACAAAA ATCCCCTTCT GCATCGGTGA CGGTAAATCT GTTACCCGGC CGCGCACTCG ATGAAGGGCA AATTAGCGCC ATTGTACATC TGGTTTCCAG CGCGGTTGCT GGTCTGCCGC CGGGGAACGT CACGCTGGTG GATCAGGGTG GACATCTGTT AACCCAGTTC AACACCAGCG GGCGCGATCT TAATGACGCT CAGTTGAAAT ATGCCAGCGA TGTCGAAGGC CGTATTCAGC GGCGTATTGA AGCGATCCTG TCGCCTATTG TTGGTAACGG TAATATTCAC GCCCAGGTCA CGGCGCAGCT GGACTTCGCC AGTAAAGAAC AAACGGAAGA ACAGTATCGC CCTAACGGTG ATGAATCTCA TGCGGCGCTT CGTTCACGCC AGCTTAATGA GAGCGAGCAA AGCGGTTCCG GTTATCCGGG CGGCGTACCG GGGGCGTTGT CGAATCAACC GGCACCTGCG AATAACGCGC CAATCAGCAC GCCTCCGGCA AATCAAAATA ACCGCCAGCA GCAGGCGAGC ACCACCAGCA ATAGCGGGCC GCGTAGCACA CAGCGGAATG AAACTAGTAA CTACGAAGTC GATCGCACCA TTCGTCATAC CAAAATGAAC GTGGGCGATG TGCAACGTCT GTCAGTCGCG GTAGTGGTGA ATTACAAAAC CTTGCCAGAC GGTAAACCAT TGCCTCTCAG CAACGAACAG ATGAAGCAAA TTGAAGATCT GACCCGCGAG GCGATGGGCT TTTCTGAAAA ACGCGGTGAC TCGCTCAATG TCGTTAACTC GCCGTTCAAT AGCAGTGACG AAAGCGGCGG AGAACTGCCG TTCTGGCAAC AGCAAGCGTT TATCGATCAG TTGCTGGCTG CCGGTCGCTG GTTGCTGGTA CTGCTGGTGG CGTGGCTGCT GTGGCGGAAA GCGGTACGCC CGCAGTTAAC ACGTCGCGCC GAGGCGATGA AAGCTGTACA GCAACAGGCG CAGGCCCGTG AGGAAGTGGA AGATGCGGTG GAAGTCCGCC TGAGCAAAGA CGAACAACTC CAACAACGAC GCGCTAACCA ACGTCTGGGG GCAGAAGTCA TGAGCCAGCG TATCCGTGAA ATGTCTGATA ACGATCCGCG CGTGGTGGCG CTGGTCATTC GCCAGTGGAT AAATAACGAT CATGAGTAA
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Protein sequence | MNATAAQTKS LEWLNRLRAN PKIPLIVAGS AAVAVMVALI LWAKAPDYRT LFSNLSDQDG GAIVSQLTQM NIPYRFSEAS GAIEVPADKV HELRLRLAQQ GLPKGGAVGF ELLDQEKFGI SQFSEQVNYQ RALEGELSRT IETIGPVKGA RVHLAMPKPS LFVREQKSPS ASVTVNLLPG RALDEGQISA IVHLVSSAVA GLPPGNVTLV DQGGHLLTQF NTSGRDLNDA QLKYASDVEG RIQRRIEAIL SPIVGNGNIH AQVTAQLDFA SKEQTEEQYR PNGDESHAAL RSRQLNESEQ SGSGYPGGVP GALSNQPAPA NNAPISTPPA NQNNRQQQAS TTSNSGPRST QRNETSNYEV DRTIRHTKMN VGDVQRLSVA VVVNYKTLPD GKPLPLSNEQ MKQIEDLTRE AMGFSEKRGD SLNVVNSPFN SSDESGGELP FWQQQAFIDQ LLAAGRWLLV LLVAWLLWRK AVRPQLTRRA EAMKAVQQQA QAREEVEDAV EVRLSKDEQL QQRRANQRLG AEVMSQRIRE MSDNDPRVVA LVIRQWINND HE
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