| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1667 |
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| Symbol | |
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| ID | 6065112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 1864425 |
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| End bp | 1868024 |
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| Gene Length | 3600 bp |
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| Protein Length | 1199 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641601080 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001724647 |
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| Protein GI | 170019693 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.620432 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCTG CTCCGCTGCC GCCGTACCGG GTACTGACCG GCCTGGTGGA CCGCTTCGGG
CGCACACTGA CCTTCCGGCG TGAGGCCGCA GGCGAATTTA CCGGGGAAAT CACCGGCGTG
ACCGATGGCG CCGGCCGTCA GTTCCGTCTG GTGCTGACCA CGCAGGCACA ACGGGCAGAA
AACGCCCGGC AGCAGGCCAT CGCCGCAGGA GCGAAAGGAC CGGATATCCC GGATTCACTG
CCGGACTATA CGGAGTATGG CCGGGATAAC GGTATCCGCC TGTCAGCGGT GTGGCTCACG
CACGACCCTG AATACCCGGA GAATTTACCT GCCGCGCCAC TGGTGCGCTA CGACTGGACG
CCACGCGGTG AGCTGGCGGC GGTGTATGAC CGCAGCGGTA CGCAGATGCG CCACTTTACT
TACGATGATA AATACCGGGG CCGGATGGTG GCGCACCGTT ACGCAGGCAG GCCGGAGATG
CGTTACCGCT ATGACGACAC CGGGCGCGTG ACGGAGCAGT TTAATCCGGC AGGCTTAAGC
TACACCTATC AGTATGAGAA AAACCGCATC ACCATCACCG ACAGCCTGAA CCGGCGCGAG
GTGCTGCACA CGGAAGGTGA AGCCGGGCTG AAATGTGTGG TGAAAACGGA ACTCGCGGAT
GGCAGCATCA CCCGAAGTAA ATTTGACTAT ATGGGGCGAC TCCAGTCACA GACGGATGCA
GCAGGCCGGA CAACAGAATA CAGTCCGAAT GTGGTGACGG GACTCGTCAC GTGCATCACC
ACGCCGGACG GCAGGAAATC GGAATTTTAC TATAACAATC AAAACCAGTT AACCTCAGCT
ACCGGGCCTG ACGGACTGGA AATGCGCCGG AAATATGATG AGTACGGGCG TCTCACGCAG
GAAACCGCCC GCAACGGCGA TGTCACCCGC TACAGTTATG ATAATCCGCA CAGTGAATTA
CCCTCTGCAA CTGAAGATGC GACGGGTAGC CGCAAGCAGA TGACGTGGAG CCGCTACGGG
CAGTTACAGA CCTTCACCGA CTGCTCAGGA TATGAAACGC ATTACGAATA CGACCGCTTT
GGTCAGATGA TGGCGGTACA CCGTGAGGAA GGCATCAGCA CGTACAATAC CTATAATCCG
CGCGGCCAGC TGGTCAGTTG GAAGGACACG CAGGGCCGTG AAACGCAGTA TGAATACAAC
GCCGCAGGCG ACCTGACCGC CGTCATTACC CCGGACGGCA ACCGGAGTGA GACACTGTAC
GATGCGTGGG GAAAGGCCGT CAGCACCACA CAGGGTGGTC TGACGCGCAG CATGGAATAC
GATGCAGCGG GACGTGTCAT CAGCCTGACC AACGAGAACG GTAGCCATAC AGAATTTAGC
TGGGATGTGC TTGACCGCCT GATACAGCAG CGCGGCTTTG ACGGGCGGAC GCAGCGTTAC
CGTTATGACC TGACCGGGAA ACTCACGCAG AGCGAGGATG AGGGGCTTAT CACCCTCTGG
CACTACGATG CATCGGACCG TATCACACAC CGCACGGTGA ACGGCGAACC GGCAGAGCAG
TGGCGGTATA ACGACCACGG CTGGCTGACA GAAATCAGCC ATCTCAGCGA AGGCCACCGG
GTGGCGGTGC ATTACGGTTA TAACCGTAAG GGACGTCTCA CAGGCGAGCG CCAGACGGTA
CATCACCCGG AGACGGGGGA ACTGCTCTGG CAGCATGAGA CGAAACACAC TTACAACGAG
CAGGGGCTGG CAAACCGCTT TCAGGCAGAC AGCCTGCCAC CGGTGGAGTG GCTAACGTAT
GGCAGCGGTT ACCTGGCGGG AATGAAACTG GGCGACACGC CGCTGGTGGA GTACACACGG
GACAGACTGC ACCGGGAAAC GGTGCGCAGC TTCGGCAATA ATGCATATGA ACTGACCAGC
ACATACACTC ACGCAGGCCG GTTACAGAGT CAGCACCTGA ACAGCCTGGT GTATGACCGT
GACTATGGCT GGAATGACAA TGGCGACCTG GTGCGCATCA GCGGCCCGCG GCAGACGCGG
GAATACGGCT ACAGCGCCAC GGGCAGGCTG GAGAGTGTGC GCACCCTCGC ACCGGACCTG
GATATCCGCA TCCCGTATGC CTCCGACCCG GCGGGAAACC GCCTGCCGGA CCCGGAGCTG
CACCCGGACA GCACCCTCAC GGCGTGGCCG GATAACCGCA TCACCAAAGA CGCGCATTAC
CTGTACCGTT ACGATGAATA CGGCAGGCTG ACGGAGAAGA CGGACCGCAT CCCGACGGGT
GTGATACGGA CGGACGACGA GCGGACCCAC CACTACCACT ACGACAGCCA GCACCGGCTG
GTGTTTTATA CGCGGATACA GCATGAGGAG CCACTGGTCG AGAGCCGCTA TCTCTACGAC
CCGCTGGGCC GCCGGACGGG GAAACGGGTG TGGCGTCGCG AGCGTGATCT GACAGGATGG
ATGTCGCTGT CGCGTAAACC GGAGGTGACG TGGTACGGAT GGGACGGCGA CCGGCTGACG
ACGGTACAGA CCGACACCAC GCGTATCCAG ACGGTATACC AGCCGGGGAG CTTCGCGCCG
CTCATCCGCA TCGAGACAGA GAACGGCGAA CTGGATAAAG CGCAGCGGCG CAGCCTGGTG
GAGAAGTTAC AGCAGGAAGG GAGTGAGGAC GGTCACGGTG TGGTGTTCCC GGTGGAACTG
GTGAGGATGC TGGACAGGCT GGAGGGGGAA ATCCGGGCAA ACTGCGTGAG CAGTGAAAGC
CGCCAGTGGC TTGCACAGTG CGGGCTGACG GTGGAGCGGC TGGCGGCACA GATAGAGCCG
GTTTATTTGC CTGAGCGAAA AATTCATCTT TATCACTGTG ACCACCGGGG ACTGCCGCTG
GCGCTTATCA GTACCGAAGG GGCAACGGAA TGGCGTGGGG AGTATGACGA GTGGGGGAAT
CAGCTTAATG AGGAGAACCC GCATCATCTG TTCCAGCCGT ACTGCCTGCC TGGGCAGCAG
TATGATGAGG AGTCGGGGCT GTGCTATAAC CGTCACCGGT ACTATGATCC GTTGCAGGGA
CGGTATATCA CCCAGGATCC GATTGGGCTG AGTGGTGGGC TGAATACATA TTCGTATCCA
TTAAATCCAA TAAATGAAAT AGATCCTTTA GGATTAAAAG TGATCGTTGT AGCTAGTGAT
CCTAATGAGG CAAAATTATT ACAGGAGGCA TATGCACAAT TAAATACAAC AAAGAGAGGA
CAAGAAATAA CAAAACCGTT AGAAGATTCG AAAGATGTAT ATAATATATA CACAATACAT
CGCGATGCTT TTTATTGCCC TGCCGGAACA ACAGATGTCT CCTGTCAAGG AAAAGAAAAA
GCGGTGTTTA TTGAGCCCAA TGAGTGTGTA AAATTACCTA CGGCACAAGG CCTGGAGGTT
ACATCACTGG CAGTTGAATT AGGACATGAA TTAGGTCATG CTCATGGAGT CCATGATGAT
GGTGGGGATA GAATGAATAA CGTAAACTTA AATGAAAATC CTATCCGCGC TGGTTTAGGT
GAAAACCCAC GGACTGCATA TGTAGTACCA CGAGTGGAGT GGGAAAAATG TCGAAAATAA
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| Protein sequence | MLPAPLPPYR VLTGLVDRFG RTLTFRREAA GEFTGEITGV TDGAGRQFRL VLTTQAQRAE
NARQQAIAAG AKGPDIPDSL PDYTEYGRDN GIRLSAVWLT HDPEYPENLP AAPLVRYDWT
PRGELAAVYD RSGTQMRHFT YDDKYRGRMV AHRYAGRPEM RYRYDDTGRV TEQFNPAGLS
YTYQYEKNRI TITDSLNRRE VLHTEGEAGL KCVVKTELAD GSITRSKFDY MGRLQSQTDA
AGRTTEYSPN VVTGLVTCIT TPDGRKSEFY YNNQNQLTSA TGPDGLEMRR KYDEYGRLTQ
ETARNGDVTR YSYDNPHSEL PSATEDATGS RKQMTWSRYG QLQTFTDCSG YETHYEYDRF
GQMMAVHREE GISTYNTYNP RGQLVSWKDT QGRETQYEYN AAGDLTAVIT PDGNRSETLY
DAWGKAVSTT QGGLTRSMEY DAAGRVISLT NENGSHTEFS WDVLDRLIQQ RGFDGRTQRY
RYDLTGKLTQ SEDEGLITLW HYDASDRITH RTVNGEPAEQ WRYNDHGWLT EISHLSEGHR
VAVHYGYNRK GRLTGERQTV HHPETGELLW QHETKHTYNE QGLANRFQAD SLPPVEWLTY
GSGYLAGMKL GDTPLVEYTR DRLHRETVRS FGNNAYELTS TYTHAGRLQS QHLNSLVYDR
DYGWNDNGDL VRISGPRQTR EYGYSATGRL ESVRTLAPDL DIRIPYASDP AGNRLPDPEL
HPDSTLTAWP DNRITKDAHY LYRYDEYGRL TEKTDRIPTG VIRTDDERTH HYHYDSQHRL
VFYTRIQHEE PLVESRYLYD PLGRRTGKRV WRRERDLTGW MSLSRKPEVT WYGWDGDRLT
TVQTDTTRIQ TVYQPGSFAP LIRIETENGE LDKAQRRSLV EKLQQEGSED GHGVVFPVEL
VRMLDRLEGE IRANCVSSES RQWLAQCGLT VERLAAQIEP VYLPERKIHL YHCDHRGLPL
ALISTEGATE WRGEYDEWGN QLNEENPHHL FQPYCLPGQQ YDEESGLCYN RHRYYDPLQG
RYITQDPIGL SGGLNTYSYP LNPINEIDPL GLKVIVVASD PNEAKLLQEA YAQLNTTKRG
QEITKPLEDS KDVYNIYTIH RDAFYCPAGT TDVSCQGKEK AVFIEPNECV KLPTAQGLEV
TSLAVELGHE LGHAHGVHDD GGDRMNNVNL NENPIRAGLG ENPRTAYVVP RVEWEKCRK
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