Gene EcolC_1568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1568 
Symbol 
ID6065221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp1739977 
End bp1740636 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content51% 
IMG OID641600984 
Productvon Willebrand factor type A 
Protein accessionYP_001724554 
Protein GI170019600 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.921097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.435058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAC AAATCACGTT TGCCACCAGC GATTTTGCCA GTAACCCGGA ACCACGTTGC 
CCCTGCATTT TGCTGCTGGA TGTTTCTGGT TCTATGAACG GTAGACCTAT TAATGAACTT
AACGCCGGAT TGGTTACCTT TCGTGATGAA CTGCTTGCTG ATCCGCTGGC TTTAAAAAGA
GTGGAACTCG GCATTGTGAC GTTCGGCCCG GTGCATGTGG AACAACCCTT TACCAGCGCC
GCTAATTTTT TTCCGCCCAT CCTGTTTGCC CAGGGCGATA CACCAATGGG TGCGGCCATT
ACCAAAGCCC TGGATATGGT AGAGGAGCGG AAACGTGAGT ATCGTGCAAA TGGTATTTCG
TATTATCGCC CGTGGATTTT CCTGATTACC GATGGTGCAC CAACCGATGA GTGGCAGGCT
GCAGCCAACA AAGTGTTTCG GGGGGAAGAA GATAAAAGGT TTGCTTTCTT TTCCATCGGT
GTTCAGGGGG CGGATATGAA GACGCTGGCA CAAATTAGCG TTCGTCAGCC TTTGCCTCTG
CAAGGATTAC AATTCCGTGA ACTGTTTAGC TGGTTATCCA GTTCGCTGCG TTCGGTTTCC
CGCTCCACGC CGGGAACGGA AGTTGTGCTG GAAGCGCCAA AAGGCTGGAC GTCAGTGTGA
 
Protein sequence
MSEQITFATS DFASNPEPRC PCILLLDVSG SMNGRPINEL NAGLVTFRDE LLADPLALKR 
VELGIVTFGP VHVEQPFTSA ANFFPPILFA QGDTPMGAAI TKALDMVEER KREYRANGIS
YYRPWIFLIT DGAPTDEWQA AANKVFRGEE DKRFAFFSIG VQGADMKTLA QISVRQPLPL
QGLQFRELFS WLSSSLRSVS RSTPGTEVVL EAPKGWTSV