Gene EcolC_1536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1536 
Symbol 
ID6065805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp1702775 
End bp1703317 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content41% 
IMG OID641600953 
Productfimbrial protein 
Protein accessionYP_001724523 
Protein GI170019569 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTT CAATTATTGC TGCCGCTGTC TTTTCTTCTT TTTTTATGAG CGCTGGAGTA 
TTTGCTGCAG ACGTTGATAC CGGAACATTA ACTATTAAGG GGAATATTGC AGAATCTCCG
TGTAAATTCG AAGCGGGTGG TGATTCAGTA AGTATTAATA TGCCGACTGT ACCAACCAGT
GTCTTTGAAG GTAAAGCTAA ATATTCTACC TATGATGATG CAGTCGGTGT AACCAGCAGC
ATGTTAAAAA TTAGCTGCCC GAAAGAAGTT GCTGGTGTAA AACTCTCGTT GATTACCAAC
GATAAAATAA CCGGTAACGA TAAGGCGATA GCCAGTAGCA ACGATACCGT GGGTTACTAT
CTCTATTTAG GTGATAACAG CGATGTCCTG GATGTTTCTG CACCTTTTAA CATTGAGAGT
TATAAAACAG CGGAAGGTCA ATATGCTATT CCGTTTAAAG CAAAATACCT GAAACTGACA
GATAACTCAG TGCAATCAGG TGATGTGTTA TCTTCTCTGG TTATGCGTGT GGCGCAGGAT
TAA
 
Protein sequence
MKRSIIAAAV FSSFFMSAGV FAADVDTGTL TIKGNIAESP CKFEAGGDSV SINMPTVPTS 
VFEGKAKYST YDDAVGVTSS MLKISCPKEV AGVKLSLITN DKITGNDKAI ASSNDTVGYY
LYLGDNSDVL DVSAPFNIES YKTAEGQYAI PFKAKYLKLT DNSVQSGDVL SSLVMRVAQD