| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1267 |
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| Symbol | ligA |
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| ID | 6064591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 1385059 |
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| End bp | 1387074 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641600682 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001724260 |
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| Protein GI | 170019306 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000309607 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000372126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT
CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCTG AATACGACAG GCTGATGCGC
GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACTCAA
CGTGTAGGCG CTGCGCCGCT GGCGGCTTTC AGCCAGATAC GCCATGAAGT ACCAATGCTG
TCACTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCTT TCAACAAACG TGTGCAGGAC
CGTCTGAAAA ACAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGCCTTGCC
GTCAGTATTC TGTATGAAAA TGGCGTTTTA GTCAGTGCCG CGACCCGTGG CGATGGCACC
ACCGGGGAAG ATATCACGTC TAATGTGCGT ACTATTCGCG CCATTCCGCT GAAGCTGCAC
GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG
TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTTTTTGC TAACCCACGT
AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC
ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT
GGCCGTTTAC TGCAATTTAA AAAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT
GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG
GGCTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCAC TGGCACAGCA GGAGCAGCTT
GGCTTTGTCG CGCGTGCCCC GCGCTGGGCG GTAGCGTTTA AATTCCCGGC GCAGGAGCAG
ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT
GCGCGTCTGG AACCTGTCCA TGTTGCTGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT
GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT
GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT
GAGGTTGTAT TCCCGACGCA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT
GAAGCGGTTG CCCGCTGTAC CGGTGGCCTG ATTTGCGGTG CGCAGCGTAA AGAGTCGCTG
AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT
CAGCTGGTTG AAAAAGAATA TGTCCATACT CCGGCAGATC TGTTCAAACT CACCGCAGGC
AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTG
GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC
GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGCA CGCTGGAAGC GCTGGAAGCC
GCTTCGATTG AAGAGCTGCA AAAGGTGCCT GATGTTGGCA TTGTCGTTGC ATCCCACGTT
CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT
GTTCACTGGC CTGCGCCGAT CGTTATCAAC GCGGAAGAGA TTGACAGCCC GTTTGCTGGT
AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA
CTGGTTGAAC TGGGCGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATT
GCCGGAGAAG CGGCAGGTTC TAAACTGGCG AAAGCGCAGG AACTGGGCAT TGAAGTCATC
GACGAAGCGG AAATGCTGCG TTTGCTGGGT AGCTGA
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| Protein sequence | MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ
RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKNNEKVTW CCELKLDGLA
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL
GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLAQQEQL
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG
EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG
KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA
ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPAPIVIN AEEIDSPFAG
KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI
DEAEMLRLLG S
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