Gene EcolC_1104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1104 
Symbol 
ID6065230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp1202911 
End bp1203486 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content49% 
IMG OID641600520 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001724098 
Protein GI170019144 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.451168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.962862 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGC AGTTAACGGA CCAGGTCCTG GTTGAACGGG TCCAGAAGGG AGATCAGAAA 
GCCTTTAACT TACTGGTAGT GCGCTATCAG CATAAAGTGG CGAGTCTGGT TTCCCGCTAT
GTGCCGTCGG GTGATGTTCC CGATGTGGTA CAAGAAGCTT TTATTAAAGC CTATCGTGCG
CTGGATTCGT TCCGGGGAGA TAGCGCTTTT TATACATGGC TGTATCGGAT TGCTGTAAAT
ACAGCGAAAA ATTACCTGGT TGCTCAGGGG CGTCGTCCAC CTTCCAGTGA TGTGGATGCC
ATTGAAGCTG AAAACTTCGA AAGTGGCGGC GCGTTGAAAG AAATTTCGAA CCCTGAGAAC
TTAATGTTGT CAGAAGAACT GAGACAGATA GTTTTCCGAA CTATTGAGTC CCTCCCGGAA
GATTTACGCA TGGCAATAAC CTTGCGGGAG CTGGATGGCC TGAGCTATGA AGAGATAGCC
GCTATCATGG ATTGTCCGGT AGGTACGGTG CGTTCACGTA TCTTCCGAGC GAGGGAAGCT
ATTGATAACA AAGTTCAACC GCTTATCAGG CGTTGA
 
Protein sequence
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV QEAFIKAYRA 
LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN
LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA
IDNKVQPLIR R